More than 300 homologs were found in PanDaTox collection
for query gene Franean1_6814 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_6814  response regulator receiver protein  100 
 
 
159 aa  310  7.999999999999999e-84  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0528  two component LuxR family transcriptional regulator  65.47 
 
 
201 aa  168  3e-41  Frankia sp. EAN1pec  Bacteria  normal  0.653057  normal 
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  58.09 
 
 
201 aa  139  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal 
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.14 
 
 
204 aa  134  4e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_014210  Ndas_1808  two component transcriptional regulator, LuxR family  53.68 
 
 
201 aa  129  2.0000000000000002e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.207018 
 
 
-
 
NC_013757  Gobs_4836  two component transcriptional regulator, LuxR family  56.59 
 
 
201 aa  128  3e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.16538  n/a   
 
 
-
 
NC_014158  Tpau_3534  two component transcriptional regulator, LuxR family  52.71 
 
 
206 aa  125  2.0000000000000002e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0288  LuxR response regulator receiver  41.73 
 
 
201 aa  99.4  2e-20  Thermobifida fusca YX  Bacteria  normal  0.0935286  n/a   
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  43.41 
 
 
197 aa  97.4  6e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal 
 
 
-
 
NC_014211  Ndas_5200  two component transcriptional regulator, LuxR family  40.6 
 
 
223 aa  96.7  1e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0156716  normal  0.415255 
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  41.86 
 
 
197 aa  96.7  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.516841 
 
 
-
 
NC_012669  Bcav_0588  two component transcriptional regulator, LuxR family  44.96 
 
 
204 aa  95.1  4e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013235  Namu_3006  two component transcriptional regulator, LuxR family  39.57 
 
 
204 aa  94  8e-19  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000248543  hitchhiker  0.000146029 
 
 
-
 
NC_013510  Tcur_1624  two component transcriptional regulator, LuxR family  45.32 
 
 
201 aa  91.7  4e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0305603  n/a   
 
 
-
 
NC_013174  Jden_0118  two component transcriptional regulator, LuxR family  40 
 
 
205 aa  90.5  7e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  0.137239  normal  0.184056 
 
 
-
 
NC_013159  Svir_11510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.09 
 
 
203 aa  90.9  7e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.575058  normal 
 
 
-
 
NC_013947  Snas_2068  two component transcriptional regulator, LuxR family  41.35 
 
 
212 aa  89.7  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.385073  normal  0.894995 
 
 
-
 
NC_013947  Snas_0503  two component transcriptional regulator, LuxR family  57.75 
 
 
202 aa  89.4  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.900292 
 
 
-
 
NC_012669  Bcav_0286  two component transcriptional regulator, LuxR family  39.84 
 
 
203 aa  89  3e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.784033  normal  0.130384 
 
 
-
 
NC_012803  Mlut_16250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.65 
 
 
224 aa  87.8  5e-17  Micrococcus luteus NCTC 2665  Bacteria  normal  0.216822  n/a   
 
 
-
 
NC_013595  Sros_4334  response regulator receiver protein  38.13 
 
 
200 aa  87.8  6e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.574495  normal  0.636855 
 
 
-
 
NC_013739  Cwoe_4753  two component transcriptional regulator, LuxR family  38.85 
 
 
201 aa  87  8e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.226774 
 
 
-
 
NC_013739  Cwoe_5628  two component transcriptional regulator, LuxR family  53.66 
 
 
200 aa  83.6  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.946433  normal  0.876589 
 
 
-
 
NC_013521  Sked_06600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.48 
 
 
200 aa  83.6  0.000000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.680692  normal 
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.69 
 
 
211 aa  83.6  0.000000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1720  LuxR family two component transcriptional regulator  38.35 
 
 
201 aa  81.3  0.000000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0691  two component transcriptional regulator, LuxR family  33.33 
 
 
190 aa  79  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4055  response regulator receiver protein  35.97 
 
 
201 aa  78.6  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0367887 
 
 
-
 
NC_013510  Tcur_2957  two component transcriptional regulator, LuxR family  59.21 
 
 
201 aa  77  0.00000000000009  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00144362  n/a   
 
 
-
 
NC_013093  Amir_1937  two component transcriptional regulator, LuxR family  41.09 
 
 
201 aa  76.6  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1264  two component LuxR family transcriptional regulator  40.16 
 
 
200 aa  77  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.86401 
 
 
-
 
NC_013595  Sros_0091  response regulator receiver protein  47.56 
 
 
204 aa  76.6  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.520551  normal 
 
 
-
 
NC_008578  Acel_0195  two component LuxR family transcriptional regulator  40.77 
 
 
205 aa  75.9  0.0000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.116105 
 
 
-
 
NC_013595  Sros_4598  response regulator receiver protein  42.86 
 
 
201 aa  73.6  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.053163 
 
 
-
 
NC_013510  Tcur_2770  two component transcriptional regulator, LuxR family  42.86 
 
 
201 aa  73.2  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.282039  n/a   
 
 
-
 
NC_013595  Sros_6441  response regulator receiver protein  35.97 
 
 
227 aa  72.4  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.176234  normal  0.0893652 
 
 
-
 
NC_011071  Smal_0258  two component transcriptional regulator, LuxR family  36.36 
 
 
200 aa  73.2  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1641  two component transcriptional regulator, LuxR family  48.81 
 
 
201 aa  72.4  0.000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2610  two component transcriptional regulator, LuxR family  39.84 
 
 
144 aa  71.6  0.000000000004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000438854  normal  0.0112001 
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  38.81 
 
 
200 aa  71.6  0.000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_013131  Caci_3654  two component transcriptional regulator, LuxR family  43.53 
 
 
201 aa  68.9  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0345388 
 
 
-
 
NC_007912  Sde_3820  two component LuxR family transcriptional regulator  31.69 
 
 
205 aa  68.9  0.00000000003  Saccharophagus degradans 2-40  Bacteria  normal  0.113202  normal 
 
 
-
 
NC_013521  Sked_03850  signal transduction histidine kinase  62.71 
 
 
418 aa  68.6  0.00000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.147645  normal  0.231181 
 
 
-
 
NC_013595  Sros_8146  response regulator receiver protein  42.86 
 
 
202 aa  68.9  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.524184 
 
 
-
 
NC_013169  Ksed_00990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.33 
 
 
201 aa  68.6  0.00000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.666199  normal 
 
 
-
 
NC_013131  Caci_1897  two component transcriptional regulator, LuxR family  35.16 
 
 
200 aa  68.6  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.299419  normal 
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  34.68 
 
 
201 aa  67.8  0.00000000007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.264232 
 
 
-
 
NC_013131  Caci_0763  two component transcriptional regulator, LuxR family  35.25 
 
 
208 aa  67.4  0.00000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.313515 
 
 
-
 
NC_013205  Aaci_0655  two component transcriptional regulator, LuxR family  38.53 
 
 
200 aa  66.6  0.0000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  40.37 
 
 
213 aa  66.6  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4572  two component transcriptional regulator, LuxR family  46.67 
 
 
200 aa  66.2  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  0.115695 
 
 
-
 
NC_009674  Bcer98_3871  two component LuxR family transcriptional regulator  29.41 
 
 
200 aa  65.9  0.0000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00685623  n/a   
 
 
-
 
NC_012669  Bcav_1587  histidine kinase  44.34 
 
 
439 aa  65.1  0.0000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.230024  normal 
 
 
-
 
NC_013510  Tcur_3614  two component transcriptional regulator, LuxR family  36.84 
 
 
201 aa  63.9  0.0000000008  Thermomonospora curvata DSM 43183  Bacteria  normal  0.765091  n/a   
 
 
-
 
NC_011772  BCG9842_B5477  DNA-binding response regulator  30.88 
 
 
200 aa  63.2  0.000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.00156963  hitchhiker  0.00000000000102018 
 
 
-
 
NC_014210  Ndas_1079  two component transcriptional regulator, LuxR family  35.63 
 
 
200 aa  62.4  0.000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.782019  normal  0.0499592 
 
 
-
 
NC_008347  Mmar10_2543  two component LuxR family transcriptional regulator  33.8 
 
 
202 aa  62.8  0.000000002  Maricaulis maris MCS10  Bacteria  normal  0.446643  normal 
 
 
-
 
NC_009052  Sbal_0347  two component LuxR family transcriptional regulator  31.71 
 
 
198 aa  62.8  0.000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0352  two component LuxR family transcriptional regulator  31.71 
 
 
198 aa  62.4  0.000000002  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0345  two component LuxR family transcriptional regulator  31.71 
 
 
198 aa  62.8  0.000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5150  two component LuxR family transcriptional regulator  28.68 
 
 
200 aa  62  0.000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5475  DNA-binding response regulator  29.41 
 
 
200 aa  62  0.000000003  Bacillus cereus B4264  Bacteria  normal  0.132453  n/a   
 
 
-
 
NC_013757  Gobs_4837  integral membrane sensor signal transduction histidine kinase  55.93 
 
 
420 aa  62  0.000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.264093  n/a   
 
 
-
 
NC_011663  Sbal223_0355  two component transcriptional regulator, LuxR family  30.89 
 
 
198 aa  61.2  0.000000005  Shewanella baltica OS223  Bacteria  normal  0.881439  hitchhiker  0.0000000668977 
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  38.2 
 
 
197 aa  61.2  0.000000005  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS5200  DNA-binding response regulator  28.68 
 
 
200 aa  61.2  0.000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5531  DNA-binding response regulator  28.68 
 
 
200 aa  60.8  0.000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5034  DNA-binding response regulator  28.68 
 
 
200 aa  61.2  0.000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.617082  n/a   
 
 
-
 
NC_007530  GBAA_5597  DNA-binding response regulator  28.68 
 
 
200 aa  61.2  0.000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5444  DNA-binding response regulator  28.68 
 
 
200 aa  61.2  0.000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5482  DNA-binding response regulator  27.94 
 
 
200 aa  60.8  0.000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5050  DNA-binding response regulator  28.68 
 
 
200 aa  60.8  0.000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0357  two component transcriptional regulator, LuxR family protein  27.62 
 
 
202 aa  60.8  0.000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3506  two component LuxR family transcriptional regulator  39.51 
 
 
198 aa  60.8  0.000000007  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_02200  two component transcriptional regulator, LuxR family  35.77 
 
 
208 aa  60.5  0.000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0351  LuxR family DNA-binding response regulator  31.15 
 
 
198 aa  60.5  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_3621  two component LuxR family transcriptional regulator  31.97 
 
 
198 aa  60.1  0.00000001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0322  two component LuxR family transcriptional regulator  31.97 
 
 
198 aa  60.1  0.00000001  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3818  two component LuxR family transcriptional regulator  31.97 
 
 
198 aa  60.1  0.00000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  40 
 
 
212 aa  58.9  0.00000002  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_013172  Bfae_03380  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  58 
 
 
153 aa  58.9  0.00000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  42.11 
 
 
196 aa  57.8  0.00000005  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7316  response regulator receiver protein  44.71 
 
 
201 aa  58.2  0.00000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  41.03 
 
 
218 aa  57.4  0.00000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_010506  Swoo_4591  two component LuxR family transcriptional regulator  38.67 
 
 
198 aa  57.4  0.00000007  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.00000001788 
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  35.79 
 
 
224 aa  57.4  0.00000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  35.96 
 
 
196 aa  56.6  0.0000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_013510  Tcur_2958  histidine kinase  54.24 
 
 
405 aa  56.6  0.0000001  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00418093  n/a   
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  35.96 
 
 
196 aa  56.6  0.0000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0132  two component LuxR family transcriptional regulator  38.27 
 
 
196 aa  55.8  0.0000002  Serratia proteamaculans 568  Bacteria  normal  0.401597  normal 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  35.96 
 
 
196 aa  56.6  0.0000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  35.96 
 
 
196 aa  56.6  0.0000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  35.96 
 
 
196 aa  56.6  0.0000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  34.83 
 
 
196 aa  55.5  0.0000003  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  34.83 
 
 
196 aa  55.5  0.0000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  34.83 
 
 
196 aa  55.5  0.0000003  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  36.11 
 
 
209 aa  55.1  0.0000003  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  34.83 
 
 
196 aa  55.5  0.0000003  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  34.83 
 
 
196 aa  55.5  0.0000003  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  34.83 
 
 
196 aa  55.5  0.0000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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