| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3818 |
|---|
| Symbol | |
|---|
| ID | 4480028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4585163 |
|---|
| End bp | 4585759 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639728431 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_871442 |
|---|
| Protein GI | 117922250 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTC TTCTCGCGGA AGATCAGGCC ATGGTGCGCG GCGCGCTCGC AGCACTGTTA
ACCCTAGCGG GCGGTTTTAC CATTACCCAA GCCAGCAATG GCGATGAAGC CTTAAACCTG
CTGAAACAAC AACATTTCGA TCTACTGCTA ACAGATATCG AAATGCCAGG AAGAACAGGT
TTGGAGTTGG CAACTTGGCT TAAAGAACAG CATAGCCATA CCAAAGTTGT CGTTATTACC
ACCTTTGGCC GCGCAGGTTA TATAAAACGC GCCATTGAAG CAGGCGTGGG TGGCTTTTTA
CTGAAAGATG CGCCCTCGGA AACCTTAGTC CATGCCATTC AACAAGTGAT TGCGGGTAAG
CGGATTATCG ATCCTGAACT GGCAATCATG GCGATTGGCG ATGTCGACCC CCTCAATGAT
AAAGAGCGCC GCGCCCTACG TTTTGCCAGT GAAGGCAAAT CCACCGCCGA GATAGCCGAG
ATGCTGTTTA TTGCCGAAGG CACGGTACGC AACTATTTAT CCGAAGCCAT TGCCAAACTC
AATGCGAGCA ACCGAATCGA TGCCGCCCGC ATCGCCAAGC AAAAAGGTTG GTTATAG
|
|---|
| Protein sequence | MHILLAEDQA MVRGALAALL TLAGGFTITQ ASNGDEALNL LKQQHFDLLL TDIEMPGRTG
LELATWLKEQ HSHTKVVVIT TFGRAGYIKR AIEAGVGGFL LKDAPSETLV HAIQQVIAGK
RIIDPELAIM AIGDVDPLND KERRALRFAS EGKSTAEIAE MLFIAEGTVR NYLSEAIAKL
NASNRIDAAR IAKQKGWL
|
|---|
| |