More than 300 homologs were found in PanDaTox collection
for query gene Avi_9178 on replicon NC_011984
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011984  Avi_9178  HNS-type DNA binding protein  100 
 
 
92 aa  180  5.0000000000000004e-45  Agrobacterium vitis S4  Bacteria  normal  0.654708  n/a   
 
 
-
 
NC_009670  Oant_4761  histone family protein DNA-binding protein  91.21 
 
 
92 aa  165  2e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  hitchhiker  0.00588654  n/a   
 
 
-
 
NC_011982  Avi_8027  HNS-type DNA binding protein  89.13 
 
 
92 aa  164  4e-40  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009475  BBta_p0009  histone-like DNA-binding protein  76.09 
 
 
130 aa  144  4.0000000000000006e-34  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.101373 
 
 
-
 
NC_011370  Rleg2_6198  histone family protein DNA-binding protein  72.53 
 
 
92 aa  134  5e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0309609  normal  0.013935 
 
 
-
 
NC_012853  Rleg_5718  histone family protein DNA-binding protein  72.53 
 
 
92 aa  133  9e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0779514  normal  0.621503 
 
 
-
 
NC_011981  Avi_7042  HNS-type DNA binding protein  73.63 
 
 
92 aa  129  1.0000000000000001e-29  Agrobacterium vitis S4  Bacteria  normal  0.815664  n/a   
 
 
-
 
NC_011982  Avi_8123  HNS-type DNA binding protein  71.43 
 
 
92 aa  127  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  0.029087  n/a   
 
 
-
 
NC_008242  Meso_4234  histone-like DNA-binding protein  77.17 
 
 
92 aa  127  5.0000000000000004e-29  Chelativorans sp. BNC1  Bacteria  normal  0.482395  n/a   
 
 
-
 
NC_009511  Swit_2320  histone family protein DNA-binding protein  60.67 
 
 
91 aa  108  2.0000000000000002e-23  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0313993 
 
 
-
 
NC_010335  Caul_5182  histone family protein DNA-binding protein  58.7 
 
 
92 aa  107  6e-23  Caulobacter sp. K31  Bacteria  normal  0.022675  normal 
 
 
-
 
NC_010338  Caul_1806  histone family protein DNA-binding protein  54.35 
 
 
92 aa  104  4e-22  Caulobacter sp. K31  Bacteria  normal  normal  0.109803 
 
 
-
 
NC_010338  Caul_2219  histone family protein DNA-binding protein  53.26 
 
 
92 aa  100  7e-21  Caulobacter sp. K31  Bacteria  normal  0.789532  normal  0.340698 
 
 
-
 
NC_007794  Saro_1217  histone-like DNA-binding protein  62.07 
 
 
91 aa  100  7e-21  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.778852  n/a   
 
 
-
 
NC_008048  Sala_2632  histone-like DNA-binding protein  56.67 
 
 
91 aa  99.4  2e-20  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009507  Swit_5141  histone family protein DNA-binding protein  54.95 
 
 
92 aa  90.9  6e-18  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.467193 
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  45.98 
 
 
90 aa  76.6  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  45.98 
 
 
90 aa  75.5  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  45.35 
 
 
90 aa  75.1  0.0000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  44.71 
 
 
94 aa  73.9  0.0000000000006  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3723  DNA-binding protein HU-beta  44.83 
 
 
90 aa  73.9  0.0000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.612497  n/a   
 
 
-
 
NC_007005  Psyr_1750  histone-like DNA-binding protein  44.83 
 
 
90 aa  73.9  0.0000000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.519537  normal  0.0235988 
 
 
-
 
NC_007492  Pfl01_3694  nucleoid protein HU beta subunit  44.83 
 
 
90 aa  73.9  0.0000000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.566059  normal 
 
 
-
 
NC_013739  Cwoe_1870  histone family protein DNA-binding protein  43.18 
 
 
91 aa  73.2  0.000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0130937 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  44.83 
 
 
90 aa  73.2  0.000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  41.38 
 
 
90 aa  72.4  0.000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  43.33 
 
 
91 aa  72.8  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  40.23 
 
 
91 aa  72.4  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  40.23 
 
 
91 aa  72.4  0.000000000002  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  41.86 
 
 
94 aa  72  0.000000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_010513  Xfasm12_0532  histone-like protein  43.53 
 
 
94 aa  72  0.000000000003  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  42.53 
 
 
91 aa  71.6  0.000000000003  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  43.68 
 
 
90 aa  71.6  0.000000000004  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_003295  RSc1714  DNA-binding protein HU-beta  40.7 
 
 
90 aa  70.9  0.000000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  0.606946  normal  0.0324854 
 
 
-
 
NC_010814  Glov_2356  histone family protein DNA-binding protein  41.11 
 
 
94 aa  70.9  0.000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0975  histone family protein DNA-binding protein  44.19 
 
 
93 aa  70.9  0.000000000006  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0981  histone family protein DNA-binding protein  44.19 
 
 
93 aa  70.9  0.000000000006  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1013  histone family protein DNA-binding protein  44.19 
 
 
93 aa  70.9  0.000000000006  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1584  histone family protein DNA-binding protein  41.86 
 
 
91 aa  70.9  0.000000000006  Halorhodospira halophila SL1  Bacteria  normal  0.532726  n/a   
 
 
-
 
NC_008340  Mlg_0762  integration host factor subunit alpha  41.18 
 
 
101 aa  70.9  0.000000000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.306695  normal 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  44.83 
 
 
90 aa  70.1  0.000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  44.83 
 
 
90 aa  70.1  0.000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  45.88 
 
 
90 aa  69.3  0.00000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_006055  Mfl201  histone-like DNA-binding protein  40.45 
 
 
90 aa  70.1  0.00000000001  Mesoplasma florum L1  Bacteria  normal  0.25153  n/a   
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  42.05 
 
 
90 aa  70.1  0.00000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  43.02 
 
 
93 aa  69.7  0.00000000001  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  45.88 
 
 
90 aa  69.3  0.00000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  39.08 
 
 
90 aa  69.3  0.00000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  42.53 
 
 
90 aa  69.3  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_011145  AnaeK_1909  integration host factor subunit alpha  40 
 
 
113 aa  68.9  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  41.38 
 
 
90 aa  68.9  0.00000000002  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_011761  AFE_2608  integration host factor, alpha subunit  40.66 
 
 
99 aa  68.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2237  integration host factor, alpha subunit  40.66 
 
 
99 aa  68.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0376768 
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  41.38 
 
 
90 aa  69.3  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  45.88 
 
 
90 aa  69.3  0.00000000002  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_007760  Adeh_1969  integration host factor subunit alpha  40 
 
 
113 aa  68.9  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.0019696  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  43.68 
 
 
90 aa  68.9  0.00000000002  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_007954  Sden_1604  integration host factor subunit alpha  41.18 
 
 
99 aa  68.9  0.00000000002  Shewanella denitrificans OS217  Bacteria  normal  0.0316087  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  42.53 
 
 
90 aa  69.3  0.00000000002  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  41.38 
 
 
90 aa  69.3  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_011891  A2cp1_1994  integration host factor subunit alpha  40 
 
 
113 aa  68.9  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.110028  n/a   
 
 
-
 
NC_010501  PputW619_4242  histone family protein DNA-binding protein  42.86 
 
 
93 aa  69.3  0.00000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  41.11 
 
 
91 aa  68.9  0.00000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_008576  Mmc1_2054  histone family protein DNA-binding protein  41.38 
 
 
91 aa  68.9  0.00000000002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00333504  normal  0.0104655 
 
 
-
 
NC_008576  Mmc1_2824  nucleoid protein Hbs  41.38 
 
 
91 aa  68.9  0.00000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.669113  normal 
 
 
-
 
NC_008789  Hhal_0433  integration host factor subunit alpha  41.18 
 
 
101 aa  68.6  0.00000000003  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  44.19 
 
 
90 aa  68.6  0.00000000003  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  37.93 
 
 
90 aa  68.2  0.00000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  43.37 
 
 
91 aa  68.6  0.00000000003  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  43.68 
 
 
90 aa  68.6  0.00000000003  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_007963  Csal_1805  integration host factor, alpha subunit  37.65 
 
 
102 aa  68.6  0.00000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009656  PSPA7_2510  integration host factor subunit alpha  40 
 
 
100 aa  68.6  0.00000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_28720  integration host factor subunit alpha  40 
 
 
100 aa  68.6  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000206678  hitchhiker  0.00000000749265 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  42.53 
 
 
90 aa  68.2  0.00000000003  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  44.71 
 
 
90 aa  68.2  0.00000000004  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  40.23 
 
 
101 aa  68.2  0.00000000004  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  40.91 
 
 
90 aa  68.2  0.00000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  43.33 
 
 
91 aa  67.8  0.00000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  43.82 
 
 
91 aa  67.8  0.00000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  40.23 
 
 
90 aa  67.8  0.00000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008345  Sfri_1710  integration host factor subunit alpha  40 
 
 
99 aa  67.8  0.00000000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.707381  n/a   
 
 
-
 
NC_009439  Pmen_1982  integration host factor subunit alpha  38.82 
 
 
100 aa  67.4  0.00000000006  Pseudomonas mendocina ymp  Bacteria  normal  0.0219997  normal  0.264768 
 
 
-
 
NC_010159  YpAngola_A0462  transcriptional regulator HU subunit alpha  44.71 
 
 
91 aa  67.4  0.00000000006  Yersinia pestis Angola  Bacteria  normal  0.082883  hitchhiker  0.00197429 
 
 
-
 
NC_010465  YPK_0354  transcriptional regulator HU subunit alpha  44.71 
 
 
91 aa  67.4  0.00000000006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.224811  n/a   
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  43.02 
 
 
91 aa  67.4  0.00000000006  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_012856  Rpic12D_1533  histone family protein DNA-binding protein  38.37 
 
 
90 aa  67.4  0.00000000006  Ralstonia pickettii 12D  Bacteria  normal  0.753498  normal  0.353479 
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  41.86 
 
 
91 aa  67.4  0.00000000006  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal 
 
 
-
 
NC_009708  YpsIP31758_3846  transcriptional regulator HU subunit alpha  44.71 
 
 
91 aa  67.4  0.00000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.219693  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  40.23 
 
 
90 aa  67.4  0.00000000007  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  40.23 
 
 
90 aa  67.4  0.00000000007  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  40.23 
 
 
90 aa  67.4  0.00000000007  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  40.23 
 
 
90 aa  67.4  0.00000000007  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
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