More than 300 homologs were found in PanDaTox collection
for query gene YpsIP31758_3846 on replicon NC_009708
Organism: Yersinia pseudotuberculosis IP 31758



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_0354  transcriptional regulator HU subunit alpha  100 
 
 
91 aa  182  1.0000000000000001e-45  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.224811  n/a   
 
 
-
 
NC_010159  YpAngola_A0462  transcriptional regulator HU subunit alpha  100 
 
 
91 aa  182  1.0000000000000001e-45  Yersinia pestis Angola  Bacteria  normal  0.082883  hitchhiker  0.00197429 
 
 
-
 
NC_009708  YpsIP31758_3846  transcriptional regulator HU subunit alpha  100 
 
 
91 aa  182  1.0000000000000001e-45  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.219693  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  97.78 
 
 
90 aa  176  1e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  97.78 
 
 
90 aa  176  1e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_012912  Dd1591_3864  transcriptional regulator HU subunit alpha  96.67 
 
 
90 aa  174  3e-43  Dickeya zeae Ech1591  Bacteria  normal  0.78216  n/a   
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  97.78 
 
 
90 aa  174  3e-43  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  96.67 
 
 
90 aa  174  5e-43  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  173  7e-43  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_011205  SeD_A4577  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  171  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.511964 
 
 
-
 
NC_011083  SeHA_C4501  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  171  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.358882  normal  0.0495174 
 
 
-
 
NC_011080  SNSL254_A4503  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  171  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0164141 
 
 
-
 
NC_011094  SeSA_A4381  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  171  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.842423 
 
 
-
 
NC_011149  SeAg_B4414  transcriptional regulator HU subunit alpha  95.56 
 
 
90 aa  171  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.18011  n/a   
 
 
-
 
CP001509  ECD_03877  HU, DNA-binding transcriptional regulator, alpha subunit  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli BL21(DE3)  Bacteria  normal  0.380115  n/a   
 
 
-
 
CP001637  EcDH1_3994  histone family protein DNA-binding protein  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4234  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5469  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.129609  normal 
 
 
-
 
NC_009801  EcE24377A_4543  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli E24377A  Bacteria  normal  0.440082  n/a   
 
 
-
 
NC_010468  EcolC_4025  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0158227 
 
 
-
 
NC_012892  B21_03830  hypothetical protein  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli BL21  Bacteria  normal  0.485291  n/a   
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
NC_010498  EcSMS35_4448  transcriptional regulator HU subunit alpha  94.44 
 
 
90 aa  170  5.999999999999999e-42  Escherichia coli SMS-3-5  Bacteria  normal  0.302586  hitchhiker  0.00101008 
 
 
-
 
NC_007984  BCI_0040  DNA-binding protein HU-alpha  83.52 
 
 
94 aa  158  2e-38  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  80 
 
 
90 aa  150  5e-36  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  78.65 
 
 
101 aa  145  2.0000000000000003e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  78.65 
 
 
90 aa  144  4.0000000000000006e-34  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  76.4 
 
 
90 aa  142  2e-33  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  73.03 
 
 
91 aa  138  1.9999999999999998e-32  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  72.53 
 
 
91 aa  132  1.9999999999999998e-30  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  69.23 
 
 
91 aa  128  3e-29  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  69.66 
 
 
90 aa  126  8.000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  68.54 
 
 
90 aa  125  1.0000000000000001e-28  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  68.54 
 
 
90 aa  125  2.0000000000000002e-28  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  67.42 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  68.54 
 
 
90 aa  124  4.0000000000000003e-28  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  69.66 
 
 
90 aa  122  2e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  69.66 
 
 
90 aa  122  2e-27  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  69.66 
 
 
90 aa  122  2e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  68.54 
 
 
101 aa  122  2e-27  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  69.66 
 
 
90 aa  122  2e-27  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  66.29 
 
 
90 aa  121  4e-27  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  68.54 
 
 
90 aa  120  6e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  68.54 
 
 
90 aa  120  6e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  68.54 
 
 
90 aa  120  6e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  68.54 
 
 
90 aa  120  6e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  68.54 
 
 
90 aa  120  6e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  65.17 
 
 
90 aa  118  3e-26  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  66.29 
 
 
90 aa  117  3.9999999999999996e-26  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  66.29 
 
 
90 aa  117  3.9999999999999996e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  66.29 
 
 
90 aa  117  3.9999999999999996e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  66.29 
 
 
90 aa  117  4.9999999999999996e-26  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  65.17 
 
 
90 aa  115  1.9999999999999998e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  65.17 
 
 
90 aa  115  1.9999999999999998e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  65.17 
 
 
90 aa  115  1.9999999999999998e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  63.74 
 
 
94 aa  114  3e-25  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  113  6.9999999999999995e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  62.22 
 
 
90 aa  112  1.0000000000000001e-24  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  64.04 
 
 
90 aa  112  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  61.8 
 
 
90 aa  111  4.0000000000000004e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  61.8 
 
 
90 aa  110  5e-24  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_010513  Xfasm12_0532  histone-like protein  61.54 
 
 
94 aa  110  5e-24  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  61.8 
 
 
90 aa  110  5e-24  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  61.8 
 
 
90 aa  110  5e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  61.8 
 
 
90 aa  110  5e-24  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  61.8 
 
 
90 aa  110  5e-24  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  60.67 
 
 
90 aa  110  6e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  60.67 
 
 
91 aa  110  8.000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  57.3 
 
 
90 aa  110  8.000000000000001e-24  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  58.89 
 
 
90 aa  109  1.0000000000000001e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  59.55 
 
 
90 aa  109  1.0000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  58.43 
 
 
90 aa  109  1.0000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  61.8 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  57.78 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
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