More than 300 homologs were found in PanDaTox collection
for query gene Tpau_3101 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_3101  GTP-binding protein YchF  100 
 
 
357 aa  714    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3392  GTP-binding protein YchF  83.57 
 
 
359 aa  584  1e-166  Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  75.56 
 
 
360 aa  537  1e-151  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  79.11 
 
 
359 aa  531  1e-150  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  77.59 
 
 
360 aa  530  1e-149  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  77.12 
 
 
376 aa  522  1e-147  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  75.77 
 
 
359 aa  523  1e-147  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  77.12 
 
 
376 aa  522  1e-147  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  72.3 
 
 
361 aa  519  1e-146  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  76.84 
 
 
376 aa  520  1e-146  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  75.63 
 
 
360 aa  519  1e-146  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  69.75 
 
 
357 aa  517  1.0000000000000001e-145  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  74.3 
 
 
358 aa  511  1e-144  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  72.85 
 
 
361 aa  513  1e-144  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  72.02 
 
 
369 aa  510  1e-143  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  70.91 
 
 
368 aa  509  1e-143  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  69.78 
 
 
364 aa  505  9.999999999999999e-143  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_26380  GTP-binding protein YchF  70.64 
 
 
361 aa  503  1e-141  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  70.8 
 
 
362 aa  504  1e-141  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  69.53 
 
 
361 aa  499  1e-140  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  70.79 
 
 
358 aa  498  1e-140  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  75.91 
 
 
357 aa  499  1e-140  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  69.81 
 
 
363 aa  498  1e-140  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  68.8 
 
 
361 aa  495  1e-139  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  72.85 
 
 
361 aa  495  1e-139  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  69.15 
 
 
363 aa  492  9.999999999999999e-139  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  71.47 
 
 
361 aa  489  1e-137  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  71.99 
 
 
357 aa  490  1e-137  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  70.11 
 
 
358 aa  485  1e-136  Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  67.77 
 
 
373 aa  484  1e-136  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  74.01 
 
 
354 aa  485  1e-136  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  70.11 
 
 
358 aa  482  1e-135  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  68.51 
 
 
362 aa  478  1e-134  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  68.16 
 
 
359 aa  476  1e-133  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  69.81 
 
 
361 aa  472  1e-132  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  68.7 
 
 
361 aa  468  9.999999999999999e-131  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  63.81 
 
 
362 aa  464  1e-129  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  64.64 
 
 
364 aa  446  1.0000000000000001e-124  Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  59.17 
 
 
354 aa  408  1e-113  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  58.01 
 
 
354 aa  407  1.0000000000000001e-112  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  58.68 
 
 
363 aa  403  1e-111  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  56.59 
 
 
364 aa  395  1e-109  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  56.94 
 
 
354 aa  393  1e-108  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  58.4 
 
 
387 aa  388  1e-107  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
366 aa  388  1e-107  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  55.37 
 
 
363 aa  390  1e-107  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1171  GTP-binding protein YchF  54.4 
 
 
364 aa  385  1e-106  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  54.55 
 
 
363 aa  383  1e-105  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_0395  GTP-dependent nucleic acid-binding protein EngD  53.05 
 
 
363 aa  382  1e-105  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00186596  n/a   
 
 
-
 
NC_008825  Mpe_A3166  putative GTP-binding protein  55.46 
 
 
364 aa  383  1e-105  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00563466 
 
 
-
 
NC_007973  Rmet_3193  GTP-dependent nucleic acid-binding protein EngD  57.81 
 
 
363 aa  384  1e-105  Cupriavidus metallidurans CH34  Bacteria  normal  0.36162  normal 
 
 
-
 
NC_010338  Caul_0708  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
366 aa  382  1e-105  Caulobacter sp. K31  Bacteria  normal  0.965008  normal 
 
 
-
 
NC_008528  OEOE_0117  GTPase, translation factor  52.99 
 
 
367 aa  382  1e-105  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  52.33 
 
 
365 aa  379  1e-104  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5626  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  381  1e-104  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000871672  n/a   
 
 
-
 
NC_005945  BAS5328  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00440809  n/a   
 
 
-
 
NC_005957  BT9727_5156  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.474948  n/a   
 
 
-
 
NC_006274  BCZK5172  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus cereus E33L  Bacteria  decreased coverage  0.000341574  n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  54.27 
 
 
363 aa  381  1e-104  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007406  Nwi_2510  GTP-dependent nucleic acid-binding protein EngD  54.01 
 
 
365 aa  380  1e-104  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.566797  normal  0.501348 
 
 
-
 
NC_007530  GBAA_5724  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000153579  n/a   
 
 
-
 
NC_007604  Synpcc7942_0554  GTP-dependent nucleic acid-binding protein EngD  55.22 
 
 
363 aa  380  1e-104  Synechococcus elongatus PCC 7942  Bacteria  normal  0.268556  normal 
 
 
-
 
NC_011658  BCAH187_A5663  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000189692  n/a   
 
 
-
 
NC_011773  BCAH820_5585  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000269 
 
 
-
 
NC_007964  Nham_3101  GTP-dependent nucleic acid-binding protein EngD  53.74 
 
 
365 aa  378  1e-104  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_011772  BCG9842_B5333  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  380  1e-104  Bacillus cereus G9842  Bacteria  hitchhiker  0.000128538  hitchhiker  0.000000465437 
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
363 aa  379  1e-104  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
366 aa  378  1e-103  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_002939  GSU0664  GTP-dependent nucleic acid-binding protein EngD  55.62 
 
 
364 aa  377  1e-103  Geobacter sulfurreducens PCA  Bacteria  normal  0.151468  n/a   
 
 
-
 
NC_002977  MCA2032  GTP-dependent nucleic acid-binding protein EngD  54.2 
 
 
363 aa  375  1e-103  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3140  GTP-dependent nucleic acid-binding protein EngD  55.22 
 
 
364 aa  376  1e-103  Ralstonia pickettii 12J  Bacteria  normal  0.48249  normal  0.369877 
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  52.05 
 
 
365 aa  375  1e-103  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
362 aa  377  1e-103  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
364 aa  376  1e-103  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_010725  Mpop_2401  GTP-dependent nucleic acid-binding protein EngD  57.26 
 
 
365 aa  375  1e-103  Methylobacterium populi BJ001  Bacteria  normal  0.819289  normal 
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  52.05 
 
 
365 aa  375  1e-103  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_010524  Lcho_0271  GTP-binding protein YchF  55.22 
 
 
364 aa  376  1e-103  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.198016 
 
 
-
 
NC_010002  Daci_1534  GTP-binding protein YchF  55.59 
 
 
364 aa  373  1e-102  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_003295  RSc2898  GTP-dependent nucleic acid-binding protein EngD  55.46 
 
 
364 aa  374  1e-102  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3618  GTP-binding protein YchF  55.31 
 
 
364 aa  374  1e-102  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1659  GTP-binding protein YchF  55.71 
 
 
363 aa  372  1e-102  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  51.47 
 
 
366 aa  374  1e-102  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_011992  Dtpsy_2928  GTP-binding protein YchF  55.31 
 
 
364 aa  374  1e-102  Acidovorax ebreus TPSY  Bacteria  normal  0.79075  n/a   
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
361 aa  374  1e-102  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_011004  Rpal_4838  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
365 aa  374  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3999  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
365 aa  372  1e-102  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1475  GTP-dependent nucleic acid-binding protein EngD  52.75 
 
 
364 aa  372  1e-102  Geobacter sp. M21  Bacteria  n/a    normal  0.0116591 
 
 
-
 
NC_011146  Gbem_2765  GTP-dependent nucleic acid-binding protein EngD  52.75 
 
 
364 aa  373  1e-102  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0155  GTP-binding protein YchF  54.92 
 
 
364 aa  372  1e-102  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.611358  normal  0.940592 
 
 
-
 
NC_008532  STER_0005  GTP-dependent nucleic acid-binding protein EngD  52.56 
 
 
371 aa  372  1e-102  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  54.59 
 
 
366 aa  373  1e-102  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_008752  Aave_0887  GTP-binding protein YchF  55.22 
 
 
364 aa  373  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0231852  normal  0.589868 
 
 
-
 
NC_013173  Dbac_0442  GTP-binding protein YchF  52.19 
 
 
366 aa  369  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.637193  n/a   
 
 
-
 
NC_011726  PCC8801_3090  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
363 aa  368  1e-101  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009079  BMA10247_A1923  GTP-dependent nucleic acid-binding protein EngD  55.01 
 
 
364 aa  370  1e-101  Burkholderia mallei NCTC 10247  Bacteria  normal  0.264442  n/a   
 
 
-
 
NC_007778  RPB_4159  GTP-dependent nucleic acid-binding protein EngD  53.55 
 
 
365 aa  370  1e-101  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.369246 
 
 
-
 
NC_007963  Csal_1521  GTP-dependent nucleic acid-binding protein EngD  52.7 
 
 
363 aa  370  1e-101  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00078802  n/a   
 
 
-
 
NC_010511  M446_2394  GTP-dependent nucleic acid-binding protein EngD  56.71 
 
 
365 aa  369  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  0.207486  decreased coverage  0.00637263 
 
 
-
 
NC_010320  Teth514_2022  GTP-dependent nucleic acid-binding protein EngD  50.69 
 
 
363 aa  368  1e-101  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>