More than 300 homologs were found in PanDaTox collection
for query gene Plim_1659 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_1659  GTP-binding protein YchF  100 
 
 
363 aa  741    Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  56.08 
 
 
363 aa  409  1e-113  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  56.08 
 
 
363 aa  408  1e-113  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_2931  GTP-binding protein YchF  53.57 
 
 
366 aa  406  1.0000000000000001e-112  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2032  GTP-dependent nucleic acid-binding protein EngD  55.1 
 
 
363 aa  403  1e-111  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0271  GTP-binding protein YchF  54.82 
 
 
364 aa  402  1e-111  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.198016 
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  54.7 
 
 
362 aa  404  1e-111  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  55.52 
 
 
361 aa  404  1e-111  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  54.14 
 
 
364 aa  402  1e-111  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_012791  Vapar_4635  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
363 aa  404  1e-111  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1835  GTP-binding protein YchF  51.79 
 
 
363 aa  399  9.999999999999999e-111  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.00000078734  normal  0.600832 
 
 
-
 
NC_008309  HS_0503  GTP-dependent nucleic acid-binding protein EngD  53.31 
 
 
363 aa  400  9.999999999999999e-111  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  54.14 
 
 
363 aa  400  9.999999999999999e-111  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2444  GTP-binding protein YchF  52.49 
 
 
363 aa  395  1e-109  Escherichia coli DH1  Bacteria  normal  0.0781916  n/a   
 
 
-
 
NC_002939  GSU0664  GTP-dependent nucleic acid-binding protein EngD  54.04 
 
 
364 aa  397  1e-109  Geobacter sulfurreducens PCA  Bacteria  normal  0.151468  n/a   
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  52.2 
 
 
366 aa  398  1e-109  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_011083  SeHA_C1981  GTP-dependent nucleic acid-binding protein EngD  53.04 
 
 
363 aa  398  1e-109  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.262835  normal 
 
 
-
 
NC_010658  SbBS512_E1367  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Shigella boydii CDC 3083-94  Bacteria  normal  0.37474  n/a   
 
 
-
 
NC_010498  EcSMS35_1939  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Escherichia coli SMS-3-5  Bacteria  normal  0.256808  normal  0.0918473 
 
 
-
 
NC_009012  Cthe_0877  GTP-dependent nucleic acid-binding protein EngD  52.75 
 
 
364 aa  397  1e-109  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00007173  n/a   
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  56.08 
 
 
363 aa  396  1e-109  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_011094  SeSA_A1923  GTP-dependent nucleic acid-binding protein EngD  53.04 
 
 
363 aa  398  1e-109  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1308  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Escherichia coli HS  Bacteria  normal  0.253077  n/a   
 
 
-
 
NC_009253  Dred_1280  GTP-binding protein YchF  53.42 
 
 
367 aa  397  1e-109  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1350  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Escherichia coli E24377A  Bacteria  normal  0.0630481  n/a   
 
 
-
 
NC_011080  SNSL254_A1917  GTP-dependent nucleic acid-binding protein EngD  53.04 
 
 
363 aa  398  1e-109  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.188872  normal 
 
 
-
 
NC_011353  ECH74115_1684  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000467912  normal  0.464774 
 
 
-
 
NC_011149  SeAg_B1353  GTP-dependent nucleic acid-binding protein EngD  53.04 
 
 
363 aa  398  1e-109  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0280261  n/a   
 
 
-
 
NC_010468  EcolC_2423  GTP-dependent nucleic acid-binding protein EngD  52.49 
 
 
363 aa  395  1e-109  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0847638 
 
 
-
 
NC_011205  SeD_A1537  GTP-dependent nucleic acid-binding protein EngD  53.04 
 
 
363 aa  398  1e-109  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0518912 
 
 
-
 
CP001509  ECD_01178  translation-associated GTPase  52.21 
 
 
363 aa  393  1e-108  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1805  GTP-binding protein YchF  53.31 
 
 
363 aa  393  1e-108  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4776  GTP-dependent nucleic acid-binding protein EngD  53.57 
 
 
366 aa  392  1e-108  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.117268  hitchhiker  0.000704522 
 
 
-
 
NC_011662  Tmz1t_3631  GTP-dependent nucleic acid-binding protein EngD  56.08 
 
 
363 aa  393  1e-108  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_2147  GTP-binding protein YchF  53.31 
 
 
363 aa  393  1e-108  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0395  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
363 aa  393  1e-108  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00186596  n/a   
 
 
-
 
NC_011071  Smal_0729  GTP-dependent nucleic acid-binding protein EngD  55.8 
 
 
363 aa  392  1e-108  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195825 
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  52.2 
 
 
366 aa  394  1e-108  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_2022  GTP-dependent nucleic acid-binding protein EngD  54.12 
 
 
363 aa  392  1e-108  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2928  GTP-binding protein YchF  53.44 
 
 
364 aa  394  1e-108  Acidovorax ebreus TPSY  Bacteria  normal  0.79075  n/a   
 
 
-
 
NC_012892  B21_01188  hypothetical protein  52.21 
 
 
363 aa  393  1e-108  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3618  GTP-binding protein YchF  53.44 
 
 
364 aa  394  1e-108  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1849  GTP-dependent nucleic acid-binding protein EngD  52.76 
 
 
363 aa  393  1e-108  Dickeya dadantii Ech703  Bacteria  normal  0.476561  n/a   
 
 
-
 
NC_011772  BCG9842_B5333  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus cereus G9842  Bacteria  hitchhiker  0.000128538  hitchhiker  0.000000465437 
 
 
-
 
NC_003909  BCE_5626  GTP-dependent nucleic acid-binding protein EngD  51.92 
 
 
366 aa  390  1e-107  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000871672  n/a   
 
 
-
 
NC_012560  Avin_41550  GTP-dependent nucleic acid-binding protein EngD  53.42 
 
 
366 aa  388  1e-107  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5328  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00440809  n/a   
 
 
-
 
NC_005957  BT9727_5156  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.474948  n/a   
 
 
-
 
NC_006274  BCZK5172  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus cereus E33L  Bacteria  decreased coverage  0.000341574  n/a   
 
 
-
 
NC_010682  Rpic_3140  GTP-dependent nucleic acid-binding protein EngD  53.17 
 
 
364 aa  391  1e-107  Ralstonia pickettii 12J  Bacteria  normal  0.48249  normal  0.369877 
 
 
-
 
NC_007298  Daro_3733  GTP-dependent nucleic acid-binding protein EngD  54.14 
 
 
363 aa  390  1e-107  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.316822 
 
 
-
 
NC_010508  Bcenmc03_0496  GTP-dependent nucleic acid-binding protein EngD  53.17 
 
 
364 aa  388  1e-107  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5663  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000189692  n/a   
 
 
-
 
NC_007517  Gmet_2845  GTP-dependent nucleic acid-binding protein EngD  52.37 
 
 
364 aa  388  1e-107  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000149199  hitchhiker  0.000000000000211408 
 
 
-
 
NC_007530  GBAA_5724  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000153579  n/a   
 
 
-
 
NC_012918  GM21_1475  GTP-dependent nucleic acid-binding protein EngD  54.04 
 
 
364 aa  389  1e-107  Geobacter sp. M21  Bacteria  n/a    normal  0.0116591 
 
 
-
 
NC_008752  Aave_0887  GTP-binding protein YchF  52.34 
 
 
364 aa  390  1e-107  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0231852  normal  0.589868 
 
 
-
 
NC_008781  Pnap_3363  GTP-dependent nucleic acid-binding protein EngD  53.72 
 
 
363 aa  390  1e-107  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_5585  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000269 
 
 
-
 
NC_009379  Pnuc_0142  GTP-binding protein YchF  53.17 
 
 
364 aa  388  1e-107  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.400282  n/a   
 
 
-
 
NC_010717  PXO_04539  GTP-dependent nucleic acid-binding protein EngD  54.97 
 
 
363 aa  389  1e-107  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.910533  n/a   
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
366 aa  389  1e-107  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  51.92 
 
 
366 aa  388  1e-107  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_008825  Mpe_A3166  putative GTP-binding protein  52.34 
 
 
364 aa  390  1e-107  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00563466 
 
 
-
 
NC_011146  Gbem_2765  GTP-dependent nucleic acid-binding protein EngD  53.76 
 
 
364 aa  388  1e-107  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_09848  putative ATP/GTP-binding protein  53.3 
 
 
364 aa  391  1e-107  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2581  GTP-dependent nucleic acid-binding protein EngD  53.17 
 
 
364 aa  388  1e-107  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2063  GTP-dependent nucleic acid-binding protein EngD  52.21 
 
 
363 aa  390  1e-107  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1835  GTP-dependent nucleic acid-binding protein EngD  52.73 
 
 
365 aa  388  1e-107  Clostridium perfringens SM101  Bacteria  normal  0.259258  n/a   
 
 
-
 
NC_009656  PSPA7_5323  GTP-dependent nucleic acid-binding protein EngD  53.7 
 
 
366 aa  389  1e-107  Pseudomonas aeruginosa PA7  Bacteria  normal  0.207284  n/a   
 
 
-
 
NC_008463  PA14_61820  GTP-dependent nucleic acid-binding protein EngD  53.7 
 
 
366 aa  389  1e-107  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000490412  hitchhiker  0.00796401 
 
 
-
 
NC_009654  Mmwyl1_3607  GTP-dependent nucleic acid-binding protein EngD  52.5 
 
 
363 aa  389  1e-107  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000140673  normal  0.0364167 
 
 
-
 
NC_008542  Bcen2424_0524  GTP-dependent nucleic acid-binding protein EngD  53.17 
 
 
364 aa  388  1e-107  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  52.35 
 
 
366 aa  388  1e-107  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_010084  Bmul_2871  GTP-dependent nucleic acid-binding protein EngD  52.89 
 
 
364 aa  387  1e-106  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.103234  normal  0.491395 
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  52.34 
 
 
365 aa  387  1e-106  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0099  GTP-dependent nucleic acid-binding protein EngD  52.62 
 
 
363 aa  387  1e-106  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.76867  n/a   
 
 
-
 
NC_003295  RSc2898  GTP-dependent nucleic acid-binding protein EngD  52.62 
 
 
364 aa  386  1e-106  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3596  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0519  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  51.24 
 
 
363 aa  387  1e-106  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
387 aa  386  1e-106  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2510  GTP-dependent nucleic acid-binding protein EngD  53.17 
 
 
365 aa  387  1e-106  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.566797  normal  0.501348 
 
 
-
 
NC_007434  BURPS1710b_3587  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0952  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0657  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1534  GTP-binding protein YchF  52.62 
 
 
364 aa  386  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_007651  BTH_I2920  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  388  1e-106  Burkholderia thailandensis E264  Bacteria  normal  0.657058  n/a   
 
 
-
 
NC_010501  PputW619_4464  GTP-dependent nucleic acid-binding protein EngD  53.15 
 
 
366 aa  385  1e-106  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1521  GTP-dependent nucleic acid-binding protein EngD  51.93 
 
 
363 aa  386  1e-106  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00078802  n/a   
 
 
-
 
NC_010551  BamMC406_0453  GTP-dependent nucleic acid-binding protein EngD  52.62 
 
 
364 aa  387  1e-106  Burkholderia ambifaria MC40-6  Bacteria  normal  0.660955  normal  0.0338644 
 
 
-
 
NC_007973  Rmet_3193  GTP-dependent nucleic acid-binding protein EngD  53.59 
 
 
363 aa  387  1e-106  Cupriavidus metallidurans CH34  Bacteria  normal  0.36162  normal 
 
 
-
 
NC_008261  CPF_2121  GTP-dependent nucleic acid-binding protein EngD  52.46 
 
 
365 aa  387  1e-106  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1008  GTP-dependent nucleic acid-binding protein EngD  53.31 
 
 
363 aa  387  1e-106  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000208433  normal  0.179939 
 
 
-
 
NC_008322  Shewmr7_1073  GTP-dependent nucleic acid-binding protein EngD  53.31 
 
 
363 aa  387  1e-106  Shewanella sp. MR-7  Bacteria  unclonable  0.00000596539  normal  0.137935 
 
 
-
 
NC_009074  BURPS668_3569  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
364 aa  387  1e-106  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0429  GTP-dependent nucleic acid-binding protein EngD  52.62 
 
 
364 aa  387  1e-106  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0117  GTPase, translation factor  52.33 
 
 
367 aa  387  1e-106  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2774  GTP-dependent nucleic acid-binding protein EngD  52.62 
 
 
363 aa  388  1e-106  Ralstonia pickettii 12D  Bacteria  normal  normal  0.97205 
 
 
-
 
NC_008577  Shewana3_1012  GTP-dependent nucleic acid-binding protein EngD  53.31 
 
 
363 aa  387  1e-106  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00042531  normal  0.0638456 
 
 
-
 
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