More than 300 homologs were found in PanDaTox collection
for query gene Pput_0613 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  100 
 
 
258 aa  527  1e-149  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  99.22 
 
 
258 aa  523  1e-147  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  91.86 
 
 
258 aa  485  1e-136  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  82.56 
 
 
258 aa  441  1e-123  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  65.25 
 
 
269 aa  340  2e-92  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4836  DNA binding response regulator, LuxR family  61.69 
 
 
260 aa  306  3e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.765839  n/a   
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  60.32 
 
 
265 aa  305  4.0000000000000004e-82  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_008463  PA14_55810  putative two-component response regulator  51.37 
 
 
275 aa  248  8e-65  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4863  LuxR family DNA-binding response regulator  52.38 
 
 
272 aa  248  1e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  0.090532  n/a   
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  41.42 
 
 
264 aa  167  2e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  32.63 
 
 
221 aa  100  2e-20  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  27.47 
 
 
212 aa  94.7  1e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  27.04 
 
 
216 aa  93.6  3e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  27.04 
 
 
216 aa  93.6  3e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  27.2 
 
 
225 aa  91.3  1e-17  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  27.2 
 
 
225 aa  90.5  2e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  27.35 
 
 
227 aa  89.7  4e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  32.26 
 
 
235 aa  87.8  2e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  25.83 
 
 
215 aa  87.4  2e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  27.47 
 
 
217 aa  86.3  4e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0819  LuxR family two component transcriptional regulator  29.91 
 
 
227 aa  85.5  7e-16  'Nostoc azollae' 0708  Bacteria  normal  0.633548  n/a   
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  29.54 
 
 
245 aa  85.1  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  32.1 
 
 
234 aa  83.6  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  30 
 
 
216 aa  83.2  0.000000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  31.65 
 
 
303 aa  83.2  0.000000000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  29.66 
 
 
231 aa  82.8  0.000000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  29.66 
 
 
231 aa  82.8  0.000000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  29.79 
 
 
231 aa  82.4  0.000000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  28.1 
 
 
242 aa  82  0.000000000000008  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  31.62 
 
 
253 aa  82  0.000000000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3680  two component transcriptional regulator, LuxR family  28.33 
 
 
223 aa  82  0.000000000000009  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.233635 
 
 
-
 
NC_011726  PCC8801_2430  two component transcriptional regulator, LuxR family  28.33 
 
 
223 aa  82  0.000000000000009  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  28.1 
 
 
242 aa  81.3  0.00000000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_011729  PCC7424_0031  two component transcriptional regulator, LuxR family  28.87 
 
 
229 aa  80.5  0.00000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  26.89 
 
 
217 aa  81.3  0.00000000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  28.09 
 
 
221 aa  80.5  0.00000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  26.81 
 
 
231 aa  80.1  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  30.42 
 
 
230 aa  79.7  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  29.05 
 
 
242 aa  79.3  0.00000000000006  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  29.58 
 
 
245 aa  79  0.00000000000007  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_005707  BCE_A0213  DNA-binding response regulator  36.43 
 
 
227 aa  77.8  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1708  two component, sigma54 specific, transcriptional regulator, Fis family  36.43 
 
 
463 aa  77.4  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2239  two component, sigma54 specific, Fis family transcriptional regulator  36.43 
 
 
466 aa  77  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0254  DNA-binding response regulator  36.43 
 
 
227 aa  77.8  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000466037 
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  27.02 
 
 
201 aa  77.4  0.0000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  28.7 
 
 
233 aa  77.8  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  28.57 
 
 
231 aa  77  0.0000000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1635  two component, sigma54 specific, transcriptional regulator, Fis family  35.66 
 
 
463 aa  76.3  0.0000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0346405  n/a   
 
 
-
 
NC_010718  Nther_0747  two component transcriptional regulator, LuxR family  25.1 
 
 
232 aa  76.6  0.0000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.643618  normal  0.38139 
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  36.03 
 
 
144 aa  76.6  0.0000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_007492  Pfl01_5184  response regulator receiver domain-containing protein  37.29 
 
 
148 aa  75.9  0.0000000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0546005  normal  0.118263 
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  27.87 
 
 
242 aa  75.9  0.0000000000007  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_013595  Sros_8872  response regulator receiver protein  30.8 
 
 
234 aa  75.5  0.0000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.347509  normal 
 
 
-
 
NC_008699  Noca_1865  response regulator receiver  36.51 
 
 
224 aa  75.5  0.0000000000009  Nocardioides sp. JS614  Bacteria  normal  0.59899  n/a   
 
 
-
 
NC_009675  Anae109_1017  two component, sigma54 specific, Fis family transcriptional regulator  35.38 
 
 
460 aa  75.1  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0996419 
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  29.58 
 
 
245 aa  75.1  0.000000000001  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_009674  Bcer98_0547  two component transcriptional regulator  35.77 
 
 
224 aa  74.7  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  24.79 
 
 
219 aa  74.3  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  30.74 
 
 
225 aa  74.3  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  30.09 
 
 
376 aa  74.3  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  28.05 
 
 
242 aa  74.3  0.000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
463 aa  74.3  0.000000000002  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  27.31 
 
 
217 aa  73.6  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0403  response regulator receiver sensor signal transduction histidine kinase  31.69 
 
 
374 aa  73.6  0.000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.150899 
 
 
-
 
NC_010501  PputW619_4847  response regulator receiver protein  35.59 
 
 
147 aa  73.6  0.000000000003  Pseudomonas putida W619  Bacteria  normal  0.0738416  normal 
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  37.1 
 
 
233 aa  73.9  0.000000000003  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  37.1 
 
 
233 aa  73.2  0.000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_011761  AFE_0024  nitrogen assimilation regulatory protein NtrX, putative  30.63 
 
 
468 aa  73.2  0.000000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  27.43 
 
 
220 aa  73.2  0.000000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0025  two component, sigma54 specific, transcriptional regulator, Fis family  30.63 
 
 
468 aa  73.2  0.000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0807039 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  29.41 
 
 
226 aa  73.2  0.000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  39.82 
 
 
470 aa  72.8  0.000000000005  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_009720  Xaut_1115  response regulator receiver protein  34.51 
 
 
127 aa  72.8  0.000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  30.83 
 
 
218 aa  72.8  0.000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  27.27 
 
 
226 aa  72.8  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0565  two component transcriptional regulator  34.15 
 
 
225 aa  72.8  0.000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  31.93 
 
 
501 aa  72.8  0.000000000006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  31.93 
 
 
481 aa  72.4  0.000000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  35.43 
 
 
225 aa  72.8  0.000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  29.67 
 
 
217 aa  72.4  0.000000000007  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  31.93 
 
 
481 aa  72.4  0.000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  27.69 
 
 
242 aa  72.4  0.000000000008  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_014230  CA2559_13448  two component, sigma54 specific, transcriptional regulator, Fis family protein  39.47 
 
 
442 aa  72.4  0.000000000008  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.471352  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  29.63 
 
 
217 aa  72  0.000000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_010814  Glov_1760  response regulator receiver modulated diguanylate cyclase  32.21 
 
 
473 aa  72  0.000000000009  Geobacter lovleyi SZ  Bacteria  normal  0.554911  n/a   
 
 
-
 
NC_012918  GM21_3098  two component, sigma54 specific, transcriptional regulator, Fis family  33.63 
 
 
491 aa  72  0.000000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011891  A2cp1_2343  two component transcriptional regulator, Fis family  37.39 
 
 
185 aa  71.6  0.00000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.888574  n/a   
 
 
-
 
NC_013521  Sked_08510  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  40.8 
 
 
227 aa  71.6  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103906  normal  0.575645 
 
 
-
 
NC_011145  AnaeK_2255  two component transcriptional regulator, Fis family  37.39 
 
 
185 aa  71.6  0.00000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0449716  n/a   
 
 
-
 
NC_011725  BCB4264_A0687  DNA-binding response regulator  34.15 
 
 
225 aa  71.2  0.00000000001  Bacillus cereus B4264  Bacteria  normal  0.037102  n/a   
 
 
-
 
NC_011725  BCB4264_A2526  DNA-binding response regulator  36 
 
 
231 aa  71.2  0.00000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0651  DNA-binding response regulator  33.33 
 
 
225 aa  71.6  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  28.63 
 
 
215 aa  71.6  0.00000000001  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007760  Adeh_1607  two component Fis family transcriptional regulator  37.39 
 
 
185 aa  71.6  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.016434  n/a   
 
 
-
 
NC_007777  Francci3_3288  two component transcriptional regulator  35.34 
 
 
272 aa  72  0.00000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.234797 
 
 
-
 
NC_008048  Sala_0758  two component transcriptional regulator  35.29 
 
 
244 aa  71.6  0.00000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.885545  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  33.74 
 
 
480 aa  71.2  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_011658  BCAH187_A2617  DNA-binding response regulator  36 
 
 
231 aa  71.2  0.00000000001  Bacillus cereus AH187  Bacteria  normal  0.993672  n/a   
 
 
-
 
NC_008530  LGAS_1735  DNA-binding response regulator  33.08 
 
 
228 aa  71.6  0.00000000001  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_0351  DNA-binding response regulator  30.13 
 
 
230 aa  71.6  0.00000000001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
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