More than 300 homologs were found in PanDaTox collection
for query gene Francci3_3871 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  100 
 
 
358 aa  709    Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  87.71 
 
 
358 aa  606  9.999999999999999e-173  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  75 
 
 
364 aa  535  1e-151  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  73.68 
 
 
361 aa  533  1e-150  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  72.35 
 
 
357 aa  530  1e-149  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  74.44 
 
 
360 aa  527  1e-148  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  76.26 
 
 
357 aa  508  1e-143  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  73 
 
 
363 aa  510  1e-143  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  73.31 
 
 
358 aa  507  9.999999999999999e-143  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  73.26 
 
 
359 aa  507  9.999999999999999e-143  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  72.53 
 
 
373 aa  502  1e-141  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  69.89 
 
 
362 aa  499  1e-140  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  73.76 
 
 
362 aa  498  1e-140  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  68.42 
 
 
368 aa  494  1e-139  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_013441  Gbro_3392  GTP-binding protein YchF  71.03 
 
 
359 aa  493  9.999999999999999e-139  Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  68.14 
 
 
363 aa  491  9.999999999999999e-139  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013521  Sked_26380  GTP-binding protein YchF  68.7 
 
 
361 aa  492  9.999999999999999e-139  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  73.26 
 
 
359 aa  489  1e-137  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  71.19 
 
 
361 aa  490  1e-137  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  71.79 
 
 
360 aa  491  1e-137  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  67.59 
 
 
369 aa  486  1e-136  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  65.47 
 
 
362 aa  485  1e-136  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_014158  Tpau_3101  GTP-binding protein YchF  70.11 
 
 
357 aa  485  1e-136  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  67.41 
 
 
361 aa  484  1e-136  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  67.31 
 
 
361 aa  484  1e-135  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  71.23 
 
 
360 aa  479  1e-134  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  70.7 
 
 
376 aa  474  1e-133  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  70.08 
 
 
361 aa  477  1e-133  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  68.44 
 
 
358 aa  475  1e-133  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  70.7 
 
 
376 aa  474  1e-133  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  70.7 
 
 
376 aa  474  1e-132  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  68.98 
 
 
361 aa  474  1e-132  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  70.34 
 
 
354 aa  469  1.0000000000000001e-131  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  65.37 
 
 
361 aa  468  1.0000000000000001e-131  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  68.52 
 
 
359 aa  468  1.0000000000000001e-131  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  65.47 
 
 
364 aa  466  9.999999999999999e-131  Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  72.07 
 
 
357 aa  463  1e-129  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  66.76 
 
 
361 aa  454  1.0000000000000001e-126  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  60.56 
 
 
354 aa  429  1e-119  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  57.81 
 
 
354 aa  392  1e-108  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  58.52 
 
 
354 aa  393  1e-108  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_003909  BCE_5626  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000871672  n/a   
 
 
-
 
NC_005945  BAS5328  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00440809  n/a   
 
 
-
 
NC_005957  BT9727_5156  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.474948  n/a   
 
 
-
 
NC_006274  BCZK5172  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus cereus E33L  Bacteria  decreased coverage  0.000341574  n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  55.49 
 
 
363 aa  388  1e-107  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  57.92 
 
 
387 aa  389  1e-107  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5333  GTP-dependent nucleic acid-binding protein EngD  54.35 
 
 
366 aa  391  1e-107  Bacillus cereus G9842  Bacteria  hitchhiker  0.000128538  hitchhiker  0.000000465437 
 
 
-
 
NC_007530  GBAA_5724  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000153579  n/a   
 
 
-
 
NC_011773  BCAH820_5585  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000269 
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  54.35 
 
 
366 aa  390  1e-107  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_011658  BCAH187_A5663  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
366 aa  389  1e-107  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000189692  n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  55.22 
 
 
363 aa  386  1e-106  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  54.35 
 
 
366 aa  386  1e-106  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  54.22 
 
 
366 aa  387  1e-106  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_3193  GTP-dependent nucleic acid-binding protein EngD  56.87 
 
 
363 aa  384  1e-105  Cupriavidus metallidurans CH34  Bacteria  normal  0.36162  normal 
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  53.39 
 
 
366 aa  384  1e-105  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_008789  Hhal_0986  GTP-binding protein YchF  55.65 
 
 
363 aa  380  1e-104  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  53.99 
 
 
362 aa  380  1e-104  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2482  GTP-binding protein YchF  52.88 
 
 
365 aa  378  1e-104  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_21870  GTP-binding protein YchF  53.42 
 
 
354 aa  375  1e-103  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0475417 
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  51.78 
 
 
365 aa  376  1e-103  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  52.75 
 
 
363 aa  377  1e-103  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  55.31 
 
 
364 aa  375  1e-103  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_007519  Dde_1698  GTP-dependent nucleic acid-binding protein EngD  52.46 
 
 
366 aa  375  1e-103  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.309195  n/a   
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  53.42 
 
 
361 aa  376  1e-103  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  51.51 
 
 
365 aa  372  1e-102  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  53.13 
 
 
366 aa  372  1e-102  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_009714  CHAB381_1047  GTP-dependent nucleic acid-binding protein EngD  52.17 
 
 
367 aa  372  1e-102  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0286  GTP-binding protein YchF  56.68 
 
 
363 aa  372  1e-102  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.79515 
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  51.51 
 
 
365 aa  372  1e-102  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_011769  DvMF_0234  GTP-dependent nucleic acid-binding protein EngD  52.19 
 
 
366 aa  372  1e-102  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0453052 
 
 
-
 
NC_009076  BURPS1106A_3596  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
364 aa  368  1e-101  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0519  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
364 aa  368  1e-101  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0027  GTP-binding protein YchF  55.31 
 
 
366 aa  369  1e-101  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  55.49 
 
 
363 aa  370  1e-101  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_008784  BMASAVP1_0657  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
364 aa  368  1e-101  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1923  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
364 aa  368  1e-101  Burkholderia mallei NCTC 10247  Bacteria  normal  0.264442  n/a   
 
 
-
 
NC_007520  Tcr_0395  GTP-dependent nucleic acid-binding protein EngD  53.83 
 
 
363 aa  369  1e-101  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00186596  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5268  GTP-dependent nucleic acid-binding protein EngD  54.35 
 
 
366 aa  371  1e-101  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0583565  n/a   
 
 
-
 
NC_013205  Aaci_2931  GTP-binding protein YchF  54.1 
 
 
366 aa  370  1e-101  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1574  GTP-dependent nucleic acid-binding protein EngD  54.74 
 
 
365 aa  369  1e-101  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.796627 
 
 
-
 
NC_008835  BMA10229_0952  GTP-dependent nucleic acid-binding protein EngD  54.1 
 
 
364 aa  368  1e-101  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1204  GTP-binding protein YchF  55.83 
 
 
372 aa  370  1e-101  Meiothermus ruber DSM 1279  Bacteria  normal  0.590839  normal  0.981589 
 
 
-
 
NC_009012  Cthe_0877  GTP-dependent nucleic acid-binding protein EngD  51.37 
 
 
364 aa  370  1e-101  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00007173  n/a   
 
 
-
 
NC_008528  OEOE_0117  GTPase, translation factor  51.48 
 
 
367 aa  370  1e-101  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_0445  GTP-binding protein YchF  52.42 
 
 
373 aa  365  1e-100  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.0330999  normal 
 
 
-
 
NC_011899  Hore_23370  GTP-binding protein YchF  53.97 
 
 
364 aa  365  1e-100  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000000155952  n/a   
 
 
-
 
NC_010682  Rpic_3140  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
364 aa  367  1e-100  Ralstonia pickettii 12J  Bacteria  normal  0.48249  normal  0.369877 
 
 
-
 
NC_004116  SAG0006  GTP-dependent nucleic acid-binding protein EngD  50.67 
 
 
371 aa  365  1e-100  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1909  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
363 aa  365  1e-100  Psychrobacter sp. PRwf-1  Bacteria  normal  0.186477  normal 
 
 
-
 
NC_010531  Pnec_0155  GTP-binding protein YchF  53.3 
 
 
364 aa  365  1e-100  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.611358  normal  0.940592 
 
 
-
 
NC_007406  Nwi_2510  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
365 aa  367  1e-100  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.566797  normal  0.501348 
 
 
-
 
NC_007604  Synpcc7942_0554  GTP-dependent nucleic acid-binding protein EngD  54.97 
 
 
363 aa  368  1e-100  Synechococcus elongatus PCC 7942  Bacteria  normal  0.268556  normal 
 
 
-
 
NC_007633  MCAP_0805  GTP-dependent nucleic acid-binding protein EngD  51.78 
 
 
364 aa  367  1e-100  Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2920  GTP-dependent nucleic acid-binding protein EngD  53.55 
 
 
364 aa  365  1e-100  Burkholderia thailandensis E264  Bacteria  normal  0.657058  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  52.96 
 
 
363 aa  367  1e-100  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4263  GTP-dependent nucleic acid-binding protein EngD  54.79 
 
 
363 aa  366  1e-100  Cyanothece sp. PCC 7425  Bacteria  normal  0.109438  normal  0.19312 
 
 
-
 
NC_008532  STER_0005  GTP-dependent nucleic acid-binding protein EngD  51.47 
 
 
371 aa  367  1e-100  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3096  GTP-binding protein YchF  57.38 
 
 
367 aa  365  1e-100  Opitutus terrae PB90-1  Bacteria  normal  normal  0.156001 
 
 
-
 
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