More than 300 homologs were found in PanDaTox collection
for query gene Lreu_1825 on replicon NC_009513
Organism: Lactobacillus reuteri DSM 20016



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009513  Lreu_1825  pseudouridine synthase  100 
 
 
306 aa  627  1e-179  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG2067  ribosomal large subunit pseudouridine synthase D  40.07 
 
 
294 aa  203  4e-51  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0046  pseudouridylate synthase, 23S RNA-specific  39.53 
 
 
297 aa  202  5e-51  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2414  pseudouridylate synthase, 23S RNA-specific  38.3 
 
 
290 aa  189  4e-47  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1453  pseudouridylate synthase, 23S RNA-specific  40.38 
 
 
285 aa  187  1e-46  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_0259  ribosomal large subunit pseudouridine synthase, RluD subfamily  37.82 
 
 
290 aa  179  7e-44  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0176  pseudouridylate synthase, 23S RNA-specific  37.41 
 
 
302 aa  163  3e-39  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4000  ribosomal large subunit pseudouridine synthase, RluA family  32.64 
 
 
307 aa  162  1e-38  Bacillus cereus G9842  Bacteria  normal  normal  0.0122358 
 
 
-
 
NC_011658  BCAH187_A1446  ribosomal large subunit pseudouridine synthase, RluA family  32.99 
 
 
307 aa  161  1e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1405  ribosomal large subunit pseudouridine synthase D  32.64 
 
 
307 aa  160  2e-38  Bacillus cereus ATCC 10987  Bacteria  normal  0.899251  n/a   
 
 
-
 
NC_005957  BT9727_1184  ribosomal large subunit pseudouridylate synthase D  32.99 
 
 
307 aa  160  2e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1186  ribosomal large subunit pseudouridine synthase D  33.68 
 
 
307 aa  161  2e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1208  RluA family pseudouridine synthase  33.22 
 
 
307 aa  160  2e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1206  RNA pseudouridylate synthase  32.64 
 
 
307 aa  160  3e-38  Bacillus anthracis str. Sterne  Bacteria  normal  0.575901  n/a   
 
 
-
 
NC_011773  BCAH820_1382  ribosomal large subunit pseudouridine synthase, RluA family  32.64 
 
 
307 aa  160  3e-38  Bacillus cereus AH820  Bacteria  n/a    normal  0.53631 
 
 
-
 
NC_007530  GBAA_1304  ribosomal large subunit pseudouridine synthase  32.64 
 
 
307 aa  160  3e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1344  ribosomal large subunit pseudouridine synthase, RluA family  32.99 
 
 
307 aa  159  5e-38  Bacillus cereus B4264  Bacteria  normal  0.929825  n/a   
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  35.94 
 
 
304 aa  159  7e-38  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1383  pseudouridine synthase, RluA family  34.72 
 
 
299 aa  150  2e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1288  RluA family pseudouridine synthase  34.32 
 
 
285 aa  149  6e-35  Thermoanaerobacter sp. X514  Bacteria  normal  0.543506  n/a   
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  30.88 
 
 
307 aa  149  8e-35  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0610  pseudouridine synthase, RluA family  33.68 
 
 
304 aa  145  6e-34  Clostridium cellulolyticum H10  Bacteria  normal  0.0358231  n/a   
 
 
-
 
NC_011830  Dhaf_4022  pseudouridine synthase, RluA family  36.84 
 
 
334 aa  144  2e-33  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000767359  n/a   
 
 
-
 
NC_007644  Moth_0869  ribosomal large subunit pseudouridine synthase D  38.6 
 
 
306 aa  143  3e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  36.57 
 
 
304 aa  143  3e-33  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  34.88 
 
 
304 aa  142  5e-33  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  32.81 
 
 
305 aa  140  1.9999999999999998e-32  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_28001  putative pseudouridylate synthase specific to ribosomal large subunit  34.11 
 
 
324 aa  140  3e-32  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  34.26 
 
 
301 aa  139  3.9999999999999997e-32  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_010320  Teth514_1821  RluA family pseudouridine synthase  34.66 
 
 
305 aa  138  1e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1372  pseudouridine synthase, RluA family  39.82 
 
 
300 aa  137  2e-31  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0736  RluA family pseudouridine synthase  33.33 
 
 
319 aa  137  2e-31  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2089  pseudouridylate synthase family protein, yabo  29.87 
 
 
298 aa  137  3.0000000000000003e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0574  RluA family pseudouridine synthase  31.27 
 
 
301 aa  137  3.0000000000000003e-31  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000115636  n/a   
 
 
-
 
NC_009012  Cthe_0908  ribosomal large subunit pseudouridine synthase D  33.08 
 
 
303 aa  136  4e-31  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00261324  n/a   
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  34.94 
 
 
296 aa  136  5e-31  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_009632  SaurJH1_1938  pseudouridine synthase  31.84 
 
 
273 aa  135  7.000000000000001e-31  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.153319  n/a   
 
 
-
 
NC_009487  SaurJH9_1904  pseudouridine synthase  31.84 
 
 
273 aa  135  7.000000000000001e-31  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.014884  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  34.47 
 
 
296 aa  135  9e-31  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_011761  AFE_0431  ribosomal large subunit pseudouridine synthase D  43.02 
 
 
319 aa  134  1.9999999999999998e-30  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  35.71 
 
 
302 aa  134  1.9999999999999998e-30  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_011206  Lferr_0593  pseudouridine synthase, RluA family  43.02 
 
 
310 aa  134  1.9999999999999998e-30  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.070842  normal 
 
 
-
 
NC_008261  CPF_2377  RluA family pseudouridine synthase  29.53 
 
 
298 aa  134  1.9999999999999998e-30  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1673  RluA family pseudouridine synthase  37.89 
 
 
306 aa  134  1.9999999999999998e-30  Desulfotomaculum reducens MI-1  Bacteria  normal  0.529944  n/a   
 
 
-
 
NC_006055  Mfl387  23S rRNA/tRNA pseudouridine synthase  32.48 
 
 
311 aa  133  3.9999999999999996e-30  Mesoplasma florum L1  Bacteria  normal  0.319286  n/a   
 
 
-
 
NC_008262  CPR_1818  pseudouridine synthase  37.33 
 
 
306 aa  132  6e-30  Clostridium perfringens SM101  Bacteria  normal  0.05074  n/a   
 
 
-
 
NC_009012  Cthe_0803  RluA family pseudouridine synthase  31.37 
 
 
318 aa  132  6e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0330464  n/a   
 
 
-
 
NC_002976  SERP1386  ribosomal large subunit pseudouridine synthase D  32.48 
 
 
274 aa  132  1.0000000000000001e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  0.019865  n/a   
 
 
-
 
NC_011884  Cyan7425_4642  pseudouridine synthase, RluA family  36.06 
 
 
313 aa  131  1.0000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.0000189125  normal  0.973939 
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  35.34 
 
 
302 aa  130  2.0000000000000002e-29  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  35.34 
 
 
302 aa  130  2.0000000000000002e-29  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  35.34 
 
 
302 aa  131  2.0000000000000002e-29  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  35.34 
 
 
302 aa  130  2.0000000000000002e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  36.09 
 
 
302 aa  131  2.0000000000000002e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  34.28 
 
 
302 aa  130  2.0000000000000002e-29  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_008639  Cpha266_1633  ribosomal large subunit pseudouridine synthase D  32.98 
 
 
350 aa  130  2.0000000000000002e-29  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.784854  n/a   
 
 
-
 
NC_007516  Syncc9605_2457  ribosomal large subunit pseudouridine synthase D  32.89 
 
 
333 aa  130  3e-29  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2104  RluA family pseudouridine synthase  36.89 
 
 
306 aa  130  3e-29  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_02111  putative pseudouridylate synthase specific to ribosomal large subunit  33.89 
 
 
327 aa  129  5.0000000000000004e-29  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  34.96 
 
 
302 aa  129  5.0000000000000004e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  34.72 
 
 
302 aa  129  5.0000000000000004e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_007404  Tbd_0810  ribosomal large subunit pseudouridine synthase D  32.12 
 
 
318 aa  129  6e-29  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.043607  normal 
 
 
-
 
NC_007510  Bcep18194_A5094  ribosomal large subunit pseudouridine synthase D  30.3 
 
 
402 aa  129  6e-29  Burkholderia sp. 383  Bacteria  normal  normal  0.760184 
 
 
-
 
NC_007633  MCAP_0395  ribosomal large subunit pseudouridine synthase A  32.88 
 
 
322 aa  129  6e-29  Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  0.134097  n/a   
 
 
-
 
NC_013216  Dtox_2363  pseudouridine synthase, RluA family  34.38 
 
 
305 aa  129  6e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011025  MARTH_orf515  ribosomal large subunit pseudouridine synthase D  35.11 
 
 
298 aa  129  9.000000000000001e-29  Mycoplasma arthritidis 158L3-1  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0473  pseudouridine synthase, RluA family  33.68 
 
 
322 aa  128  9.000000000000001e-29  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  hitchhiker  0.000500273 
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  34.96 
 
 
302 aa  128  1.0000000000000001e-28  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_011898  Ccel_0593  pseudouridine synthase, RluA family  29.51 
 
 
299 aa  128  1.0000000000000001e-28  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000735687  n/a   
 
 
-
 
NC_010508  Bcenmc03_1817  RluA family pseudouridine synthase  29.97 
 
 
360 aa  128  1.0000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.294999 
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  34.96 
 
 
302 aa  128  1.0000000000000001e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_011830  Dhaf_2390  pseudouridine synthase, RluA family  31.67 
 
 
302 aa  128  1.0000000000000001e-28  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.837448  n/a   
 
 
-
 
NC_011901  Tgr7_0815  pseudouridine synthase, RluA family  36.09 
 
 
315 aa  128  1.0000000000000001e-28  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.689288  n/a   
 
 
-
 
NC_010551  BamMC406_1704  RluA family pseudouridine synthase  29.97 
 
 
407 aa  127  2.0000000000000002e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.225391  normal 
 
 
-
 
NC_008817  P9515_02221  putative pseudouridylate synthase specific to ribosomal large subunit  32.67 
 
 
320 aa  127  2.0000000000000002e-28  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.135305  n/a   
 
 
-
 
NC_008819  NATL1_02691  putative pseudouridylate synthase specific to ribosomal large subunit  31.49 
 
 
326 aa  128  2.0000000000000002e-28  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.88343  normal 
 
 
-
 
NC_013739  Cwoe_3518  pseudouridine synthase, RluA family  32.32 
 
 
299 aa  127  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3230  RluA family pseudouridine synthase  34.72 
 
 
320 aa  127  2.0000000000000002e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1731  RluA family pseudouridine synthase  29.97 
 
 
405 aa  127  2.0000000000000002e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.895388  n/a   
 
 
-
 
NC_007335  PMN2A_1560  putative pseudouridylate synthase specific to ribosomal large subunit  31.49 
 
 
326 aa  127  3e-28  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09330  ribosomal large subunit pseudouridine synthase D  30.79 
 
 
308 aa  127  3e-28  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00125155  n/a   
 
 
-
 
NC_008062  Bcen_6286  pseudouridine synthase, RluD  29.97 
 
 
402 aa  127  3e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1793  RluA family pseudouridine synthase  29.97 
 
 
402 aa  127  3e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0949  RluA family pseudouridine synthase  35.06 
 
 
309 aa  126  5e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_02111  putative pseudouridylate synthase specific to ribosomal large subunit  31.25 
 
 
319 aa  125  6e-28  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.496147  n/a   
 
 
-
 
NC_009675  Anae109_0059  RluA family pseudouridine synthase  29.78 
 
 
339 aa  126  6e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.14313 
 
 
-
 
NC_013411  GYMC61_1632  pseudouridine synthase, RluA family  33.2 
 
 
304 aa  125  7e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007513  Syncc9902_2141  pseudouridine synthase, RluD  32.45 
 
 
339 aa  125  8.000000000000001e-28  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0195  putative pseudouridylate synthase specific to ribosomal large subunit  31.02 
 
 
319 aa  125  8.000000000000001e-28  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.0799995  n/a   
 
 
-
 
NC_011059  Paes_1440  pseudouridine synthase, RluA family  32.99 
 
 
347 aa  124  1e-27  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.738263  normal 
 
 
-
 
NC_013889  TK90_2034  pseudouridine synthase, RluA family  34.63 
 
 
319 aa  125  1e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  35.75 
 
 
304 aa  124  1e-27  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_011773  BCAH820_1284  ribosomal large subunit pseudouridine synthase, RluA family  31.8 
 
 
292 aa  125  1e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009091  P9301_02131  putative pseudouridylate synthase specific to ribosomal large subunit  31.35 
 
 
319 aa  125  1e-27  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2719  RluA family pseudouridine synthase  39.55 
 
 
332 aa  124  2e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.344852  n/a   
 
 
-
 
NC_012034  Athe_1413  pseudouridine synthase, RluA family  35.02 
 
 
293 aa  124  2e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0119542  n/a   
 
 
-
 
NC_013061  Phep_1219  pseudouridine synthase, RluA family  31.69 
 
 
342 aa  124  2e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1604  pseudouridine synthase, RluA family  36.61 
 
 
331 aa  124  3e-27  Ammonifex degensii KC4  Bacteria  normal  0.357256  n/a   
 
 
-
 
NC_010682  Rpic_1919  pseudouridine synthase, RluA family  31.5 
 
 
370 aa  123  3e-27  Ralstonia pickettii 12J  Bacteria  normal  0.338974  normal  0.0110313 
 
 
-
 
NC_010001  Cphy_2356  RluA family pseudouridine synthase  31.88 
 
 
313 aa  123  3e-27  Clostridium phytofermentans ISDg  Bacteria  normal  0.105918  n/a   
 
 
-
 
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