More than 300 homologs were found in PanDaTox collection
for query gene STER_0259 on replicon NC_008532
Organism: Streptococcus thermophilus LMD-9



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008532  STER_0259  ribosomal large subunit pseudouridine synthase, RluD subfamily  100 
 
 
290 aa  601  1.0000000000000001e-171  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG2067  ribosomal large subunit pseudouridine synthase D  66.1 
 
 
294 aa  404  1e-111  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2414  pseudouridylate synthase, 23S RNA-specific  49.82 
 
 
290 aa  276  4e-73  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1453  pseudouridylate synthase, 23S RNA-specific  44.32 
 
 
285 aa  198  7e-50  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_1184  ribosomal large subunit pseudouridylate synthase D  37.45 
 
 
307 aa  180  2.9999999999999997e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1206  RNA pseudouridylate synthase  37.09 
 
 
307 aa  179  4e-44  Bacillus anthracis str. Sterne  Bacteria  normal  0.575901  n/a   
 
 
-
 
NC_007530  GBAA_1304  ribosomal large subunit pseudouridine synthase  37.09 
 
 
307 aa  179  4e-44  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1382  ribosomal large subunit pseudouridine synthase, RluA family  37.09 
 
 
307 aa  179  4e-44  Bacillus cereus AH820  Bacteria  n/a    normal  0.53631 
 
 
-
 
NC_006274  BCZK1186  ribosomal large subunit pseudouridine synthase D  37.45 
 
 
307 aa  179  5.999999999999999e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1825  pseudouridine synthase  37.82 
 
 
306 aa  179  5.999999999999999e-44  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1446  ribosomal large subunit pseudouridine synthase, RluA family  37.45 
 
 
307 aa  179  5.999999999999999e-44  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  36.58 
 
 
307 aa  178  1e-43  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1208  RluA family pseudouridine synthase  36.88 
 
 
307 aa  176  5e-43  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1405  ribosomal large subunit pseudouridine synthase D  36.88 
 
 
307 aa  174  1.9999999999999998e-42  Bacillus cereus ATCC 10987  Bacteria  normal  0.899251  n/a   
 
 
-
 
NC_013411  GYMC61_1383  pseudouridine synthase, RluA family  36.71 
 
 
299 aa  174  1.9999999999999998e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008531  LEUM_0046  pseudouridylate synthase, 23S RNA-specific  39.02 
 
 
297 aa  174  1.9999999999999998e-42  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4000  ribosomal large subunit pseudouridine synthase, RluA family  36 
 
 
307 aa  169  5e-41  Bacillus cereus G9842  Bacteria  normal  normal  0.0122358 
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  36.11 
 
 
304 aa  169  7e-41  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1344  ribosomal large subunit pseudouridine synthase, RluA family  36.73 
 
 
307 aa  165  9e-40  Bacillus cereus B4264  Bacteria  normal  0.929825  n/a   
 
 
-
 
NC_008528  OEOE_0176  pseudouridylate synthase, 23S RNA-specific  40.98 
 
 
302 aa  160  2e-38  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1386  ribosomal large subunit pseudouridine synthase D  37.45 
 
 
274 aa  146  4.0000000000000006e-34  Staphylococcus epidermidis RP62A  Bacteria  normal  0.019865  n/a   
 
 
-
 
NC_009632  SaurJH1_1938  pseudouridine synthase  37.6 
 
 
273 aa  143  3e-33  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.153319  n/a   
 
 
-
 
NC_009487  SaurJH9_1904  pseudouridine synthase  37.6 
 
 
273 aa  143  3e-33  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.014884  n/a   
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  37.22 
 
 
304 aa  143  4e-33  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  38.31 
 
 
296 aa  140  3e-32  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  36.36 
 
 
296 aa  138  1e-31  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_008262  CPR_2089  pseudouridylate synthase family protein, yabo  33.22 
 
 
298 aa  136  3.0000000000000003e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2377  RluA family pseudouridine synthase  34.17 
 
 
298 aa  136  4e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2104  RluA family pseudouridine synthase  34.98 
 
 
306 aa  135  5e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1324  pseudouridine synthase, RluA family  35.25 
 
 
328 aa  135  9e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1348  RluA family pseudouridine synthase  32.16 
 
 
303 aa  134  9.999999999999999e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  0.628416  n/a   
 
 
-
 
NC_008262  CPR_1818  pseudouridine synthase  34.28 
 
 
306 aa  133  3e-30  Clostridium perfringens SM101  Bacteria  normal  0.05074  n/a   
 
 
-
 
NC_009484  Acry_2719  RluA family pseudouridine synthase  35.74 
 
 
332 aa  132  5e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.344852  n/a   
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  34.12 
 
 
301 aa  131  2.0000000000000002e-29  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_009253  Dred_1673  RluA family pseudouridine synthase  34.48 
 
 
306 aa  129  6e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  0.529944  n/a   
 
 
-
 
NC_008576  Mmc1_2132  ribosomal large subunit pseudouridine synthase D  35.29 
 
 
332 aa  129  6e-29  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.864009 
 
 
-
 
NC_011899  Hore_09330  ribosomal large subunit pseudouridine synthase D  36.21 
 
 
308 aa  129  8.000000000000001e-29  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00125155  n/a   
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  34.75 
 
 
302 aa  128  1.0000000000000001e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_013216  Dtox_2363  pseudouridine synthase, RluA family  35.93 
 
 
305 aa  128  1.0000000000000001e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1417  ribosomal large subunit pseudouridine synthase D  35.74 
 
 
339 aa  127  2.0000000000000002e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0473  pseudouridine synthase, RluA family  34.96 
 
 
322 aa  127  2.0000000000000002e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  hitchhiker  0.000500273 
 
 
-
 
NC_008639  Cpha266_1633  ribosomal large subunit pseudouridine synthase D  34.56 
 
 
350 aa  126  4.0000000000000003e-28  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.784854  n/a   
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  35.14 
 
 
302 aa  126  5e-28  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_013515  Smon_1100  pseudouridine synthase, RluA family  35.74 
 
 
297 aa  125  6e-28  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  34.36 
 
 
302 aa  125  7e-28  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_008820  P9303_28001  putative pseudouridylate synthase specific to ribosomal large subunit  34.47 
 
 
324 aa  125  8.000000000000001e-28  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_1865  RluA family pseudouridine synthase  35.36 
 
 
344 aa  125  1e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_006055  Mfl387  23S rRNA/tRNA pseudouridine synthase  36.06 
 
 
311 aa  124  2e-27  Mesoplasma florum L1  Bacteria  normal  0.319286  n/a   
 
 
-
 
NC_010424  Daud_0949  RluA family pseudouridine synthase  35.22 
 
 
309 aa  124  2e-27  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0929  ribosomal large subunit pseudouridine synthase D  36.82 
 
 
303 aa  124  2e-27  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3230  RluA family pseudouridine synthase  34.96 
 
 
320 aa  124  2e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  36.55 
 
 
304 aa  124  2e-27  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0610  pseudouridine synthase, RluA family  32.96 
 
 
304 aa  124  3e-27  Clostridium cellulolyticum H10  Bacteria  normal  0.0358231  n/a   
 
 
-
 
NC_003910  CPS_2290  ribosomal large subunit pseudouridine synthase C  37.22 
 
 
360 aa  123  4e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_3046  ribosomal large subunit pseudouridine synthase D  38.16 
 
 
332 aa  123  4e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1813  pseudouridine synthase, RluA family  33.21 
 
 
303 aa  123  4e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  35.91 
 
 
305 aa  122  5e-27  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_02691  putative pseudouridylate synthase specific to ribosomal large subunit  34.7 
 
 
326 aa  122  6e-27  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.88343  normal 
 
 
-
 
NC_007335  PMN2A_1560  putative pseudouridylate synthase specific to ribosomal large subunit  34.7 
 
 
326 aa  122  6e-27  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  34.36 
 
 
302 aa  122  8e-27  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  34.36 
 
 
302 aa  122  8e-27  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_010655  Amuc_0008  pseudouridine synthase, RluA family  36.5 
 
 
323 aa  122  9e-27  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  33.98 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  33.98 
 
 
302 aa  121  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_007347  Reut_A2274  ribosomal large subunit pseudouridine synthase C  29.97 
 
 
352 aa  121  9.999999999999999e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0810  ribosomal large subunit pseudouridine synthase D  34.24 
 
 
318 aa  121  9.999999999999999e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.043607  normal 
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  33.98 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_011773  BCAH820_1284  ribosomal large subunit pseudouridine synthase, RluA family  32.42 
 
 
292 aa  121  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  33.98 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_009505  BOV_1598  ribosomal large subunit pseudouridine synthase D  32.44 
 
 
334 aa  120  1.9999999999999998e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.8835  n/a   
 
 
-
 
NC_004310  BR1651  ribosomal large subunit pseudouridine synthase D  32.65 
 
 
347 aa  120  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1103  ribosomal large subunit pseudouridylate synthase D  31.88 
 
 
297 aa  120  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  33.98 
 
 
302 aa  120  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_008700  Sama_1988  pseudouridylate synthase  33.58 
 
 
330 aa  120  1.9999999999999998e-26  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00771455  normal  0.0114075 
 
 
-
 
NC_013501  Rmar_0069  pseudouridine synthase  37.5 
 
 
235 aa  121  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  0.555782  n/a   
 
 
-
 
NC_010320  Teth514_1288  RluA family pseudouridine synthase  34.81 
 
 
285 aa  120  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  0.543506  n/a   
 
 
-
 
NC_010581  Bind_0348  RluA family pseudouridine synthase  32.12 
 
 
346 aa  120  1.9999999999999998e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1594  RluA family pseudouridine synthase  32.08 
 
 
329 aa  121  1.9999999999999998e-26  Shewanella loihica PV-4  Bacteria  normal  0.0260553  normal  0.0130241 
 
 
-
 
NC_009012  Cthe_0908  ribosomal large subunit pseudouridine synthase D  33.6 
 
 
303 aa  120  3e-26  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00261324  n/a   
 
 
-
 
NC_006274  BCZK1097  pseudouridylate synthase (pseudouridine synthase)  32.26 
 
 
297 aa  120  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1255  ribosomal large subunit pseudouridine synthase, RluA family  30.07 
 
 
297 aa  120  3e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  37.04 
 
 
304 aa  120  3e-26  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_002978  WD1162  ribosomal large subunit pseudouridine synthase D  36.45 
 
 
276 aa  120  3.9999999999999996e-26  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  0.0658766  n/a   
 
 
-
 
NC_010003  Pmob_0736  RluA family pseudouridine synthase  34.48 
 
 
319 aa  119  3.9999999999999996e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1121  pseudouridine synthetase  32.62 
 
 
297 aa  119  4.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1214  ribosomal large subunit pseudouridine synthase  32.62 
 
 
297 aa  119  4.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0947  pseudouridine synthase, RluA family  34.12 
 
 
345 aa  119  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  normal  0.48756 
 
 
-
 
NC_009901  Spea_2503  RluA family pseudouridine synthase  31.62 
 
 
319 aa  119  4.9999999999999996e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  0.721496  n/a   
 
 
-
 
NC_009616  Tmel_0989  RluA family pseudouridine synthase  35.09 
 
 
306 aa  119  7e-26  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00899774  n/a   
 
 
-
 
NC_013203  Apar_0410  pseudouridine synthase  34.98 
 
 
246 aa  119  7e-26  Atopobium parvulum DSM 20469  Bacteria  normal  0.503733  normal 
 
 
-
 
NC_010320  Teth514_1821  RluA family pseudouridine synthase  34.57 
 
 
305 aa  119  7.999999999999999e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0345  RluA family pseudouridine synthase  37.67 
 
 
351 aa  119  7.999999999999999e-26  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2003  ribosomal large subunit pseudouridine synthase D  32.81 
 
 
334 aa  118  9.999999999999999e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.704766  normal  0.26865 
 
 
-
 
NC_009091  P9301_02131  putative pseudouridylate synthase specific to ribosomal large subunit  35 
 
 
319 aa  118  9.999999999999999e-26  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_2141  pseudouridine synthase, RluD  34.34 
 
 
339 aa  118  9.999999999999999e-26  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2457  ribosomal large subunit pseudouridine synthase D  33.58 
 
 
333 aa  118  9.999999999999999e-26  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  33.59 
 
 
302 aa  118  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_011059  Paes_1440  pseudouridine synthase, RluA family  33.7 
 
 
347 aa  118  9.999999999999999e-26  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.738263  normal 
 
 
-
 
NC_013411  GYMC61_1911  pseudouridine synthase, RluA family  33.6 
 
 
304 aa  118  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_1491  pseudouridine synthase, RluA family protein  31.79 
 
 
318 aa  118  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.446351  n/a   
 
 
-
 
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