| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_09330 |
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| Symbol | |
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| ID | 7313426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | + |
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| Start bp | 1005577 |
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| End bp | 1006503 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643611372 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_002508684 |
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| Protein GI | 220931776 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00125155 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGTGG ATGAAAAAGT TTATGAAGTT TCTTCTGAAG AAGAGGGGAA GAGGATAGAT
AAATATCTTA GTAAGTTAAA TAAAGATTTA TCACGTTCTT ATATTCAGAA ACTTATTGAT
AATGATAAGG TTCTCGTTAA CGGGGAATCT GTTAAACGAA GTTTTAAAGT AAACAGGGGT
GATCATATTC GATTAATCAT TCCCCCACCG GAAGATTCCG GGATAAAACC AGTGGAGATG
GATCTTGATA TTATTTATGA AGATAAGGAT ATTTTGGTAT TAAATAAAAA TGCAGGACTG
GTTGTCCACC CGGCACCAGG TAACCATGAA AACACCCTTG TTAATGCTCT TATAGCTTAC
TGTGATAACC TGTCAACAAT AAGTGGGGTA AATCGTCCAG GGATTGTACA CAGGCTTGAT
AAGGATACAT CCGGGGTTAT GGTAATTGCC AAAAACGATA TAAGTCACCG GAAACTGGTA
GAACAATTTA AACAGAGAAA GACAAAAAAA TATTACCGGA CCTTATTAAA AGGAGAACTA
CCATATAAAG AGGGAAAAAT AGATGCCCCC ATCGGGCGAG ACCCCCATGA TCGTAAGAAA
ATGGCGGTTA CCAGGAAGAA TAGTAAAAAA GCGGTTACAT ATTTTAAAGT ACTGGAATTT
TTCCGTGACC ATTCCTATGT TGAGGTTGAA TTAAAGACGG GTCGAACCCA CCAGATCAGG
GTTCACTTTT CTTATATGGG TTTTCCTGTT GTTGGTGATA GTATTTATGG AAAAAAGAGA
AACAGGTTAC AGGCTACAAG GCAGCTTCTT CATGCCTACC GGCTGGGTTT TTATCATCCC
CGTAATGATA AATGGGTTGA GTATAAGGCC TCGCTTCCTG ATGACTTTAA GAAGGCCCTT
GATATATTAG AAAACAAATT TAAATAA
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| Protein sequence | MDVDEKVYEV SSEEEGKRID KYLSKLNKDL SRSYIQKLID NDKVLVNGES VKRSFKVNRG
DHIRLIIPPP EDSGIKPVEM DLDIIYEDKD ILVLNKNAGL VVHPAPGNHE NTLVNALIAY
CDNLSTISGV NRPGIVHRLD KDTSGVMVIA KNDISHRKLV EQFKQRKTKK YYRTLLKGEL
PYKEGKIDAP IGRDPHDRKK MAVTRKNSKK AVTYFKVLEF FRDHSYVEVE LKTGRTHQIR
VHFSYMGFPV VGDSIYGKKR NRLQATRQLL HAYRLGFYHP RNDKWVEYKA SLPDDFKKAL
DILENKFK
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