| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_28001 |
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| Symbol | rluD |
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| ID | 4777978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9303 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008820 |
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| Strand | + |
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| Start bp | 2465555 |
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| End bp | 2466529 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640088323 |
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| Product | putative pseudouridylate synthase specific to ribosomal large subunit |
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| Protein accession | YP_001018795 |
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| Protein GI | 124024488 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACATTGG ACAAACGGAC ATTGGCGTTC GGAGAAGGTG AGGGTGAATT GCTGAAGCTG
CACTACCCCA AACCCTTGCC AATGCGTCTG GATCGTTGGC TTGTGAGCCA ACGATCGGAG
CAGAGCCGTT CACACATCCA AAAGTTTATT GAGGCAGGTC TTGTACGTGT AAACGGCATC
ACCGGGAGAG CCAAGACTCC TTTGCGCCAA GGCGATGAGG TGCAGTTGTG GATGCCGCCA
CCAGAACCTT TGCCGTATCT GCAACCGGAA GCAATGCACT TAGACGTGCT ATTTGAGGAT
AGACATCTGA TCGTGATCAA CAAGCCTGCA GGCCTCACAG TGCATCCGGC TCCAGGCAAT
CGAAACGGCA CGTTAGTGAA TGGTCTTTTG CATCATTGCT CTGATCTGCC TGGCATCAGT
GGCAAGTTGC GACCAGGCAT CGTGCATCGT CTCGATAAAG ACACCACTGG CTGCATCGTG
ATTGCCAAGA GTCAGGAGGC ATTGGTGAAA CTGCAGCAAC AGATTCAGAA ACGCATTGCA
TCGCGCAACT ATTTGGCTGT CGTGCATGGC GCTCCGACAG GCGACCAAGG CACGATCGTG
GCAGCGATTG GTCGCCATCC GGTGGATCGC AAAAAATATG CCGTGGTAAC TGAAGACGGA
GGCCGTCATG CTTGCACCCA TTGGACGTTG GTTGAACGAT TAGGTGACTA TTCCTTGCTG
CGTTTCCAAC TTGATACCGG GCGTACCCAT CAGATTCGTG TTCATTGCGC TCACATTGGT
CATCCAATTG TTGGTGATCC CATTTACAGC CGCTGCCGCA AGTTGCCGAT CGATTTACCT
GGCCAGATTC TTCACGCAGT GCAGCTTGGT TTAGACCATC CGCTCACGGG TGAGCGGATG
GTCTTTGAGG CACCGTTGCC AGATCTATTT GAGAAGCTTC TGGCCGTGTT GCGTCGACGA
ACATGCACAA CCTAA
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| Protein sequence | MTLDKRTLAF GEGEGELLKL HYPKPLPMRL DRWLVSQRSE QSRSHIQKFI EAGLVRVNGI
TGRAKTPLRQ GDEVQLWMPP PEPLPYLQPE AMHLDVLFED RHLIVINKPA GLTVHPAPGN
RNGTLVNGLL HHCSDLPGIS GKLRPGIVHR LDKDTTGCIV IAKSQEALVK LQQQIQKRIA
SRNYLAVVHG APTGDQGTIV AAIGRHPVDR KKYAVVTEDG GRHACTHWTL VERLGDYSLL
RFQLDTGRTH QIRVHCAHIG HPIVGDPIYS RCRKLPIDLP GQILHAVQLG LDHPLTGERM
VFEAPLPDLF EKLLAVLRRR TCTT
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