| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3230 |
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| Symbol | |
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| ID | 4957470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 3513117 |
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| End bp | 3514079 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640182418 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001114557 |
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| Protein GI | 134301061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCAA CAAAAACATG GGAAAACCAC TACCCTGTGG CAATTTATAG AGAAGGAAGG
CTAAAAGTGA AGTCTTATCA TCGCCATAAG ATATCCCAGG AACACGAGGG ATTTACTGTT
GAAAATTATC TGAAAAATAT TTTGCAGTAT TCCGGTAGAA AGATCCAGAA ATTAACCCGA
CGCAAGGGTA TTCTCTTGAA CGGCAAAACC GTCTACCTGC AAAAAAAGCT AAATGCAGAG
GATACCCTTA GTATCCTCGA CTTAGAGGAT ACTAACTACG GTGTTCAACC AGAAAAGGGC
GCCATTGAAG TACTCTATGA AGATGATTTT CTTTTGGTGT TAAATAAACC CGCTCACCAA
CTTGTTCACC CCACCGGGCA GACAACCCGG GGCACAATGG CTAATTATTT GGCTTACTAT
CTTAAACAAC GTAACGTAGT CAGTGCCATT CGCCCTGTAC ATAGGTTAGA CCGGGAAACT
TCCGGCTGTG TGATTTTTGC GAAGGACTCC CGCAGCCAAT TCATTCTGGA ACAACAATTA
AAAGAAAGAA CGCTGAAGCG TACCTACTGG GCCTTGGTTA AAGGCATAGT CCATCCTCCC
TCTGGAACCA TTGACGCCCC CATTGGCCCG CACCCCAGCC TTGCAAACCG TCGGGCAATC
AATGAACACG GGGAACAGTC CATTACCCAT TACCAGACCC TGCGTAGTTT TCCGGAAATT
TCACTACTGA AATTAAATCT GGATACCGGG AGAACCCACC AAATCCGCCT GCATTTGGCC
CATTTAGGAT ATCCCATTAT CGGTGATCGT ATGTATGGTG TGCGGTCCCC ATGGATCAAC
AGGCAGGCTT TGCATGCCTA TGACGTTAGC TTTAGGCATT TAAAGGAAAA TCATGAGATA
GCCGTACACG CCCCTCTTCC GACGGACTTT GCCCAAGCCA TTAATTTTTG CGATAAACCA
TAA
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| Protein sequence | MAPTKTWENH YPVAIYREGR LKVKSYHRHK ISQEHEGFTV ENYLKNILQY SGRKIQKLTR
RKGILLNGKT VYLQKKLNAE DTLSILDLED TNYGVQPEKG AIEVLYEDDF LLVLNKPAHQ
LVHPTGQTTR GTMANYLAYY LKQRNVVSAI RPVHRLDRET SGCVIFAKDS RSQFILEQQL
KERTLKRTYW ALVKGIVHPP SGTIDAPIGP HPSLANRRAI NEHGEQSITH YQTLRSFPEI
SLLKLNLDTG RTHQIRLHLA HLGYPIIGDR MYGVRSPWIN RQALHAYDVS FRHLKENHEI
AVHAPLPTDF AQAINFCDKP
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