More than 300 homologs were found in PanDaTox collection
for query gene SERP1386 on replicon NC_002976
Organism: Staphylococcus epidermidis RP62A



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002976  SERP1386  ribosomal large subunit pseudouridine synthase D  100 
 
 
274 aa  558  1e-158  Staphylococcus epidermidis RP62A  Bacteria  normal  0.019865  n/a   
 
 
-
 
NC_009487  SaurJH9_1904  pseudouridine synthase  82.78 
 
 
273 aa  466  9.999999999999999e-131  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.014884  n/a   
 
 
-
 
NC_009632  SaurJH1_1938  pseudouridine synthase  82.78 
 
 
273 aa  466  9.999999999999999e-131  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.153319  n/a   
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  35.74 
 
 
304 aa  176  4e-43  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  35.79 
 
 
307 aa  173  1.9999999999999998e-42  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1184  ribosomal large subunit pseudouridylate synthase D  35.48 
 
 
307 aa  169  6e-41  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1186  ribosomal large subunit pseudouridine synthase D  35.48 
 
 
307 aa  168  7e-41  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1383  pseudouridine synthase, RluA family  34.97 
 
 
299 aa  167  1e-40  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A1446  ribosomal large subunit pseudouridine synthase, RluA family  35.84 
 
 
307 aa  168  1e-40  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1206  RNA pseudouridylate synthase  35.48 
 
 
307 aa  166  4e-40  Bacillus anthracis str. Sterne  Bacteria  normal  0.575901  n/a   
 
 
-
 
NC_011773  BCAH820_1382  ribosomal large subunit pseudouridine synthase, RluA family  35.48 
 
 
307 aa  166  4e-40  Bacillus cereus AH820  Bacteria  n/a    normal  0.53631 
 
 
-
 
NC_007530  GBAA_1304  ribosomal large subunit pseudouridine synthase  35.48 
 
 
307 aa  166  4e-40  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4000  ribosomal large subunit pseudouridine synthase, RluA family  35.38 
 
 
307 aa  162  7e-39  Bacillus cereus G9842  Bacteria  normal  normal  0.0122358 
 
 
-
 
NC_003909  BCE_1405  ribosomal large subunit pseudouridine synthase D  35.13 
 
 
307 aa  161  9e-39  Bacillus cereus ATCC 10987  Bacteria  normal  0.899251  n/a   
 
 
-
 
NC_011725  BCB4264_A1344  ribosomal large subunit pseudouridine synthase, RluA family  35.13 
 
 
307 aa  161  9e-39  Bacillus cereus B4264  Bacteria  normal  0.929825  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1208  RluA family pseudouridine synthase  34.77 
 
 
307 aa  160  3e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2414  pseudouridylate synthase, 23S RNA-specific  37.55 
 
 
290 aa  156  3e-37  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG2067  ribosomal large subunit pseudouridine synthase D  38.81 
 
 
294 aa  154  1e-36  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1453  pseudouridylate synthase, 23S RNA-specific  38.52 
 
 
285 aa  152  8e-36  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_0259  ribosomal large subunit pseudouridine synthase, RluD subfamily  37.45 
 
 
290 aa  146  3e-34  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1288  RluA family pseudouridine synthase  35.54 
 
 
285 aa  140  3e-32  Thermoanaerobacter sp. X514  Bacteria  normal  0.543506  n/a   
 
 
-
 
NC_008531  LEUM_0046  pseudouridylate synthase, 23S RNA-specific  33.69 
 
 
297 aa  139  3.9999999999999997e-32  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_08290  pseudouridine synthase, RluA family  34.36 
 
 
310 aa  138  1e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3518  pseudouridine synthase, RluA family  38.36 
 
 
299 aa  138  1e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_1256  RluA family pseudouridine synthase  34.55 
 
 
305 aa  137  2e-31  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1281  RluA family pseudouridine synthase  34.55 
 
 
305 aa  137  2e-31  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.71357  n/a   
 
 
-
 
NC_008528  OEOE_0176  pseudouridylate synthase, 23S RNA-specific  34.83 
 
 
302 aa  134  9.999999999999999e-31  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0175  pseudouridine synthase, RluA family  35.91 
 
 
318 aa  134  1.9999999999999998e-30  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3127  pseudouridine synthase, RluA family  31.8 
 
 
327 aa  133  3e-30  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1348  RluA family pseudouridine synthase  30.6 
 
 
303 aa  133  3.9999999999999996e-30  Desulfotomaculum reducens MI-1  Bacteria  normal  0.628416  n/a   
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  34.36 
 
 
301 aa  133  3.9999999999999996e-30  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  33.46 
 
 
302 aa  132  6.999999999999999e-30  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_009513  Lreu_1825  pseudouridine synthase  32.48 
 
 
306 aa  132  7.999999999999999e-30  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  36.94 
 
 
302 aa  129  4.0000000000000003e-29  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_009524  PsycPRwf_1572  RluA family pseudouridine synthase  35.48 
 
 
420 aa  129  5.0000000000000004e-29  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.00305296  hitchhiker  0.00710721 
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  36.94 
 
 
302 aa  129  6e-29  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_002976  SERP0763  ribosomal large subunit pseudouridine synthase D  38.61 
 
 
305 aa  128  8.000000000000001e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3230  RluA family pseudouridine synthase  33.73 
 
 
320 aa  128  9.000000000000001e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0916  RluA family pseudouridine synthase  30.53 
 
 
297 aa  128  1.0000000000000001e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  34.41 
 
 
296 aa  127  2.0000000000000002e-28  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_012793  GWCH70_0777  pseudouridine synthase, RluA family  30.71 
 
 
298 aa  127  2.0000000000000002e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  36.04 
 
 
302 aa  127  2.0000000000000002e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  36.04 
 
 
302 aa  127  2.0000000000000002e-28  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  35.48 
 
 
296 aa  127  2.0000000000000002e-28  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_005945  BAS1121  pseudouridine synthetase  29.82 
 
 
297 aa  126  3e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1284  ribosomal large subunit pseudouridine synthase, RluA family  29.82 
 
 
292 aa  127  3e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_1214  ribosomal large subunit pseudouridine synthase  29.82 
 
 
297 aa  126  3e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  36.49 
 
 
302 aa  126  3e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_005957  BT9727_1103  ribosomal large subunit pseudouridylate synthase D  29.47 
 
 
297 aa  126  5e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1097  pseudouridylate synthase (pseudouridine synthase)  29.47 
 
 
297 aa  125  6e-28  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1324  pseudouridine synthase, RluA family  32.02 
 
 
328 aa  125  6e-28  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2363  pseudouridine synthase, RluA family  32.97 
 
 
305 aa  125  9e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0386  RluA family pseudouridine synthase  34.93 
 
 
303 aa  124  1e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  38.2 
 
 
304 aa  124  1e-27  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_1186  ribosomal large subunit pseudouridine synthase D  32.56 
 
 
300 aa  124  2e-27  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204845  n/a   
 
 
-
 
NC_007969  Pcryo_1127  pseudouridine synthase, RluD  32.79 
 
 
396 aa  124  2e-27  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.965473 
 
 
-
 
NC_013205  Aaci_1303  pseudouridine synthase, RluA family  33.48 
 
 
314 aa  124  2e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1194  ribosomal large subunit pseudouridine synthase D  33.33 
 
 
323 aa  123  3e-27  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1632  pseudouridine synthase, RluA family  30.36 
 
 
304 aa  123  3e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_0771  ribosomal large subunit pseudouridine synthase D  33.33 
 
 
323 aa  123  3e-27  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.497941  n/a   
 
 
-
 
NC_011661  Dtur_1813  pseudouridine synthase, RluA family  35.4 
 
 
303 aa  123  4e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2034  pseudouridine synthase, RluA family  27.68 
 
 
319 aa  123  4e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0606  pseudouridine synthase RluD  37.56 
 
 
391 aa  122  5e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.32929  normal 
 
 
-
 
NC_007404  Tbd_0810  ribosomal large subunit pseudouridine synthase D  31.45 
 
 
318 aa  122  6e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.043607  normal 
 
 
-
 
NC_012034  Athe_1372  pseudouridine synthase, RluA family  33.61 
 
 
300 aa  122  7e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1257  ribosomal large subunit pseudouridine synthase D  32.38 
 
 
400 aa  121  9.999999999999999e-27  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.810064 
 
 
-
 
NC_011126  HY04AAS1_1520  pseudouridine synthase, RluA family  33.82 
 
 
308 aa  121  9.999999999999999e-27  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1322  ribosomal large subunit pseudouridine synthase D  28.42 
 
 
297 aa  121  1.9999999999999998e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0736  RluA family pseudouridine synthase  34.02 
 
 
319 aa  120  1.9999999999999998e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1344  ribosomal large subunit pseudouridine synthase D  29.09 
 
 
403 aa  120  1.9999999999999998e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2551  ribosomal large subunit pseudouridine synthase D  29.01 
 
 
321 aa  120  1.9999999999999998e-26  Saccharophagus degradans 2-40  Bacteria  normal  0.682293  hitchhiker  0.00325884 
 
 
-
 
NC_011658  BCAH187_A1360  ribosomal large subunit pseudouridine synthase, RluA family  28.42 
 
 
297 aa  120  3e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  36.32 
 
 
304 aa  120  3e-26  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_008390  Bamb_1731  RluA family pseudouridine synthase  29.54 
 
 
405 aa  120  3e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.895388  n/a   
 
 
-
 
NC_010551  BamMC406_1704  RluA family pseudouridine synthase  29.54 
 
 
407 aa  119  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.225391  normal 
 
 
-
 
NC_009637  MmarC7_0252  RluA family pseudouridine synthase  31.56 
 
 
298 aa  119  3.9999999999999996e-26  Methanococcus maripaludis C7  Archaea  normal  normal  0.995369 
 
 
-
 
NC_009513  Lreu_0929  ribosomal large subunit pseudouridine synthase D  36.49 
 
 
303 aa  119  3.9999999999999996e-26  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1818  pseudouridine synthase  36.1 
 
 
306 aa  119  3.9999999999999996e-26  Clostridium perfringens SM101  Bacteria  normal  0.05074  n/a   
 
 
-
 
NC_008261  CPF_2104  RluA family pseudouridine synthase  36.1 
 
 
306 aa  119  4.9999999999999996e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0815  pseudouridine synthase, RluA family  33.02 
 
 
315 aa  119  4.9999999999999996e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.689288  n/a   
 
 
-
 
NC_011725  BCB4264_A1255  ribosomal large subunit pseudouridine synthase, RluA family  27.66 
 
 
297 aa  119  4.9999999999999996e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1911  pseudouridine synthase, RluA family  34.78 
 
 
304 aa  118  9e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008531  LEUM_1373  ribosomal large subunit pseudouridine synthase D  39.29 
 
 
312 aa  118  9e-26  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  32.33 
 
 
305 aa  118  9.999999999999999e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1196  pseudouridine synthase, RluA family  34.47 
 
 
307 aa  118  9.999999999999999e-26  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3265  pseudouridine synthase, RluA family protein  35.05 
 
 
322 aa  117  1.9999999999999998e-25  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09330  ribosomal large subunit pseudouridine synthase D  31.5 
 
 
308 aa  117  1.9999999999999998e-25  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00125155  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1110  RluA family pseudouridine synthase  28.67 
 
 
297 aa  117  1.9999999999999998e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2253  ribosomal large subunit pseudouridine synthase D  29.71 
 
 
391 aa  117  1.9999999999999998e-25  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00391915  n/a   
 
 
-
 
NC_009975  MmarC6_1649  RluA family pseudouridine synthase  34.63 
 
 
297 aa  117  1.9999999999999998e-25  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2346  ribosomal large subunit pseudouridine synthase D  34.7 
 
 
438 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0455755 
 
 
-
 
NC_010681  Bphyt_1841  pseudouridine synthase, RluA family  34.25 
 
 
431 aa  117  1.9999999999999998e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.482122  normal  0.168334 
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  33.2 
 
 
304 aa  117  1.9999999999999998e-25  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_008825  Mpe_A0657  ribosomal large subunit pseudouridine synthase C  28.94 
 
 
320 aa  117  3e-25  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_008531  LEUM_0680  pseudouridylate synthase, 23S RNA-specific  30 
 
 
299 aa  116  3.9999999999999997e-25  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
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