Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SERP1386 |
Symbol | |
ID | 3241450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus epidermidis RP62A |
Kingdom | Bacteria |
Replicon accession | NC_002976 |
Strand | + |
Start bp | 1443141 |
End bp | 1443965 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 637168040 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_188955 |
Protein GI | 57867268 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.019865 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA CAATACCTAA ACAATTTAAC GATTATACAT TGAGAGAGAT TTTCCAATAT TTAAAATTAC CTAAAAAAGA CTTACATCAA CTGAATATGT CTAAAGAAAT TTTAATTAAT AAAGAGTACG GTACATTATT AAATAATGTT AAAACTGGTG ATCATGTTGA GATACCAACC CCTAATGAAG TAAGTAATTA TTTACCAAGT TATCGATATG CTCAAATTTA TTACGAGGAT GATGACTTGG CCATTGTCAT GAAACCAAAA GGTGTTAAAA CGCATCCCAA TGATTTAAAA GAGAGCAACA CACTTATGAA CCATGTGATT TACACTGTTG ATAGTGAATA TGTTGAGCCC ATACATCGAC TAGATCAAGA AACAGTAGGT TTATTGATAG TTGCTAAAAA TCCGCTTATG AAAAAAATCT TAGACCGAAT GTTAGAATAT AATGAAATTA CGCGTATATA TAAAGCAAAT GTCAAAGCGT TGTTACCTAT TAAGCCACAA ACGATAGATA TGCCTATTGG TAAAGATAAA TTTCATTCAA ACAAACGAAG AATTTCCAAC ACAGGTCAAC GTGCAATCAC TCACATTATT AACTCTAAAA TGATTAAAGA AGGTGTATGT CAACTCGACA TTAAACTAGA TACAGGTCGA ACACACCAAA TTCGTGTGCA CCTTGCTGAG ATTGGCCATC CAGTTATTGG GGATCCACTT TATGGAACTT CAACATTACG ACAATTAGAG CTAAATAGTC ATCAAATTGA ATTTACTCAT CCACTGACTC AAGAAATTAT TTCTGTAAGT CTAGATGATA AATAG
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Protein sequence | MKFTIPKQFN DYTLREIFQY LKLPKKDLHQ LNMSKEILIN KEYGTLLNNV KTGDHVEIPT PNEVSNYLPS YRYAQIYYED DDLAIVMKPK GVKTHPNDLK ESNTLMNHVI YTVDSEYVEP IHRLDQETVG LLIVAKNPLM KKILDRMLEY NEITRIYKAN VKALLPIKPQ TIDMPIGKDK FHSNKRRISN TGQRAITHII NSKMIKEGVC QLDIKLDTGR THQIRVHLAE IGHPVIGDPL YGTSTLRQLE LNSHQIEFTH PLTQEIISVS LDDK
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