Gene Pcryo_1127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcryo_1127 
Symbol 
ID4033670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter cryohalolentis K5 
KingdomBacteria 
Replicon accessionNC_007969 
Strand
Start bp1360042 
End bp1361232 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content47% 
IMG OID637973592 
Productpseudouridine synthase, RluD 
Protein accessionYP_580392 
Protein GI93005955 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.965473 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACCA ATTTACCCGC GAACCAATCC ACTGAAGATT CATCAATGAC AGACTTATCA 
ACGCAAGGTT CACCTGTGCC AGAATCCACG ATACCCAATG AATTATTAAC CATCAATGAG
CAATTTGACG AGCATATGGA CGATGATAAC GTGTCAGATG ATGAGTTGCT TAATGACGAA
GACGAGCATG GCGATAATGA AGTCTCGGTC GCAGGGCAAT CTGTGCCTGT TGTGGTTGAC
GTGAAGCATA CGGTCATAGA AGACGAAGCA GGTTTGCGTA TTGATAAACT GGCATCAAAA
ATATTTACCG ATTTTTCACG TGTCCAGTTA CAAGGCTGGG TAAGTGATGG CAGCTTGCTC
TATAACGGTA GCATACAAAA ACCTAAGATC CGTGTTAAAG CTGGCGATAT CTTGCATCTG
TCGACGACTT TAGAGCAGCA TAGCGAAGAT CAGCCAGAAG ATATCGCAAT CGACGTGGTT
TATGAAGATG ATGACGTATT GGTCATCAAT AAGCCAGTCG GCATGGTGGT ACATCCAGGT
GCCGGTAATC AAACAGGCAC TTTGGTAAAC GCGCTATTGT ATCACTATCC GCAGCAGCAC
CATTTGCCGC GTGCAGGTTT GGTACACCGT ATTGATAAAG ATACTTCAGG GCTATTATTG
ATTGGTAAAA CCAAACCCGC ACAGCTGGCA CTGATGGAGC AGCTAAAGGA CAAGTCAGTG
TATCGTCATT ACCAATGTGT GGTCGCAGGG GATGCAGCGA GTCTATCTCG TCATCGCCGT
ATTGACGCGC CCATTGGACG CCATCGTAAT CAGCGTACCA AAATGACGGT GATGACGGCA
GGACGCGAAG CTGTGACTCA CCTGTTGAAT GTAACCGCGC TTAATGGTAA CTATTGTTTG
TTGGATATAG GGCTTGAGAC AGGGCGTACG CATCAGATTC GTGTGCATCT GAGCCATATT
ACTTATCCTA TTGTTGGTGA TAGAGTCTAT GGCGGTCGTC GTCAGCTACG TGCTGGTCTA
ACAGAAGCGC AGCGTCAAGC GATTAATAAC TTCCCGCGTC AAGCACTCCA TGCTTATACG
TTGGGTTTCG TCCATCCAAC GACTGGTGAA GACGTTGAGG TCACTACACC AATGCCTGAA
GATATGCAGC AGCTAATGGC AGTATTAAGT GACGGCTATG ATGAAGAATA A
 
Protein sequence
MTTNLPANQS TEDSSMTDLS TQGSPVPEST IPNELLTINE QFDEHMDDDN VSDDELLNDE 
DEHGDNEVSV AGQSVPVVVD VKHTVIEDEA GLRIDKLASK IFTDFSRVQL QGWVSDGSLL
YNGSIQKPKI RVKAGDILHL STTLEQHSED QPEDIAIDVV YEDDDVLVIN KPVGMVVHPG
AGNQTGTLVN ALLYHYPQQH HLPRAGLVHR IDKDTSGLLL IGKTKPAQLA LMEQLKDKSV
YRHYQCVVAG DAASLSRHRR IDAPIGRHRN QRTKMTVMTA GREAVTHLLN VTALNGNYCL
LDIGLETGRT HQIRVHLSHI TYPIVGDRVY GGRRQLRAGL TEAQRQAINN FPRQALHAYT
LGFVHPTTGE DVEVTTPMPE DMQQLMAVLS DGYDEE