| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1186 |
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| Symbol | |
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| ID | 5132011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 1159924 |
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| End bp | 1160826 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530111 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001214643 |
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| Protein GI | 147669825 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000204845 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGAACGT TTAAACTGGT AGCCGAAACT GCCGGCGAAA GACTGGATAA ATATATTACC
CAAAAGGAAT CAGGGCTTTC CCGCAGTTTT ATTCAGGAAC TGGTGAGTTC AGGTCATATA
CTGGTAAACA ACCAGTCTGC CAAACCCAGC CTGAGGCTTA AAACCGGCGA TACAATAACT
ATAGAAATCC CTCCCGAAAC CCCCTCTGAA CTTAAAGCCG AAAATATACC GCTGGAAATA
ATCTTCCAGG ATAAAGACCT GTTGCTTATA AACAAGCCTC CCGGACTTAC CGTACATCCT
GCCCCCGGTC ACCCTGACCA CACACTGGTA AACGGGGTAT TGGCACTGGA ACCTGAAATG
GAAGATTTTG ATGACCCTCT TCGCCCCGGA ATAGTCCACC GTCTGGATAA AGATACCTCC
GGACTGCTGC TGGTAGCTAA AAACCGTCAG GCACTGGCCA ACCTGTCTGC CCAGTTTAAA
GAACGGACCG TACGCAAGTA CTATCTGGCA CTGGTAAAAG GGGAACTAAG GCCTGCCGAA
GGGTTTATTG AAGCCCCCTT GGGGCGTGAC CCCCAAAACC GCCAGAAAAT TGCAGTGGTA
TCTGACGGGA GGCATGCCCG TACCGGGTAT AAAGTACTGC GGTATATTCA AGGATACAGC
CTGCTTGAAG TCAAACTTGA AACCGGCCGT ACTCACCAGA TACGTGTCCA TTTTGCCGCC
ATAGGCCACC CGGTGGCAGG TGATGCAGTT TACGGCCAAA AGGAATCCTG GGTAAAACGG
CAGTTCCTTC ATGCGCACCG CCTTAGCTTT GCCCTGCCTT CAAACGGGCA GGTAGTGGAG
TTCACCTCCC CTCTTCCGCC GGATCTGGAA GAAGCCCTGA AAATACTGGA AACCCCCTCC
TGA
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| Protein sequence | MRTFKLVAET AGERLDKYIT QKESGLSRSF IQELVSSGHI LVNNQSAKPS LRLKTGDTIT
IEIPPETPSE LKAENIPLEI IFQDKDLLLI NKPPGLTVHP APGHPDHTLV NGVLALEPEM
EDFDDPLRPG IVHRLDKDTS GLLLVAKNRQ ALANLSAQFK ERTVRKYYLA LVKGELRPAE
GFIEAPLGRD PQNRQKIAVV SDGRHARTGY KVLRYIQGYS LLEVKLETGR THQIRVHFAA
IGHPVAGDAV YGQKESWVKR QFLHAHRLSF ALPSNGQVVE FTSPLPPDLE EALKILETPS
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