| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1257 |
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| Symbol | rluD |
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| ID | 3515214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 1510078 |
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| End bp | 1511280 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637669945 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_264541 |
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| Protein GI | 71065814 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.810064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATCA ATTTACCTGC GAATCAATCC ACTCAAGATT CATCACTTAA AGACTTATTA
ACGCAAGGTT CACCTGTGCA AGAATCAACG ATACCCAATG AATTATTAAC CACTAATGAG
CTACTTGATG AGCATATGGA CGATGATAAT GTGTCCGATG ATTTGCCAGA TGATGAGCTA
CTTGATGATG AAGACGAGCA CAGCGATGAT AAAAGCTCAG TAGCGGGGCA AGCAGTGCCT
GTTCTTATCG ATGTAACGCA TACGGTCACA GAAGAAGAGG CCGGTTTGCG TATTGATAAG
CTGGCATCAA AAATATTTAT CGATTTTTCA CGTGTCCAGT TACAAGGCTG GGTAAGTGAT
GGTAGCTTGC TTTATAACGG TAGCGTACAA AAACCGAAGA TTCGTGTCAA AGCCGGTGAT
GTCTTGCATT TATCGACGAT TTTAGAGCAG CATAGTGCAG ATCAACCAGA AGATATCGCT
ATCGACGTGG TTTATGAAGA CGATGAAGTA TTGGTCATCA ATAAACCTGT CGGTATGGTG
GTACATCCAG GTGCGGGCAA TCAAGCAGGT ACTTTGGTCA ATGCGCTCCT ATATCACTAT
CCACAGCACC ATCATTTGCC GCGTGCAGGC TTAGTACACC GTATTGATAA AGATACCTCA
GGGCTATTGC TGATTGGTAA AACCAAGCCA GCACAGCTTG CACTGATGGA GCAGCTAAAA
GACAAGTCAG TCTATCGTCA TTATCAATGT GTGGTAGCGG GGGATGCAGC AAGTCTATTG
CGCCATCGCC GTATTGACGC GCCAATCGGA CGCCATCGTA ATCAGCGTAC CAAAATGACA
GTGATGACGG CAGGACGTGA AGCCGTGACT CACTTATTGA ATGTGACCGC CCTTAATGGC
AACTATTGTC TACTAGATGT AGGGCTTGAG ACAGGCCGTA CGCATCAGAT TCGCGTGCAT
TTGAGTCATA TTACCTATCC TATCGTTGGT GATAGAGTCT ATGGCGGTCG TCGTCAGCTG
CGTGCAGGTC TAACGGAGGC TCAGCGTCAA GCGATTAATA ACTTCCCGCG TCAAGCATTG
CATGCTTATA TCTTGGGTTT TGTTCATCCA ACGACTGGTG AAGATATTGA AGTAACCACG
CCAATGCCTG AAGATATGCA GCAACTAATG GCGGTATTAA GTGACGGCTA TGATGCTGAG
TAA
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| Protein sequence | MTINLPANQS TQDSSLKDLL TQGSPVQEST IPNELLTTNE LLDEHMDDDN VSDDLPDDEL
LDDEDEHSDD KSSVAGQAVP VLIDVTHTVT EEEAGLRIDK LASKIFIDFS RVQLQGWVSD
GSLLYNGSVQ KPKIRVKAGD VLHLSTILEQ HSADQPEDIA IDVVYEDDEV LVINKPVGMV
VHPGAGNQAG TLVNALLYHY PQHHHLPRAG LVHRIDKDTS GLLLIGKTKP AQLALMEQLK
DKSVYRHYQC VVAGDAASLL RHRRIDAPIG RHRNQRTKMT VMTAGREAVT HLLNVTALNG
NYCLLDVGLE TGRTHQIRVH LSHITYPIVG DRVYGGRRQL RAGLTEAQRQ AINNFPRQAL
HAYILGFVHP TTGEDIEVTT PMPEDMQQLM AVLSDGYDAE
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