| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1386 |
|---|
| Symbol | |
|---|
| ID | 3241450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 1443141 |
|---|
| End bp | 1443965 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637168040 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_188955 |
|---|
| Protein GI | 57867268 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.019865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA CAATACCTAA ACAATTTAAC GATTATACAT TGAGAGAGAT TTTCCAATAT
TTAAAATTAC CTAAAAAAGA CTTACATCAA CTGAATATGT CTAAAGAAAT TTTAATTAAT
AAAGAGTACG GTACATTATT AAATAATGTT AAAACTGGTG ATCATGTTGA GATACCAACC
CCTAATGAAG TAAGTAATTA TTTACCAAGT TATCGATATG CTCAAATTTA TTACGAGGAT
GATGACTTGG CCATTGTCAT GAAACCAAAA GGTGTTAAAA CGCATCCCAA TGATTTAAAA
GAGAGCAACA CACTTATGAA CCATGTGATT TACACTGTTG ATAGTGAATA TGTTGAGCCC
ATACATCGAC TAGATCAAGA AACAGTAGGT TTATTGATAG TTGCTAAAAA TCCGCTTATG
AAAAAAATCT TAGACCGAAT GTTAGAATAT AATGAAATTA CGCGTATATA TAAAGCAAAT
GTCAAAGCGT TGTTACCTAT TAAGCCACAA ACGATAGATA TGCCTATTGG TAAAGATAAA
TTTCATTCAA ACAAACGAAG AATTTCCAAC ACAGGTCAAC GTGCAATCAC TCACATTATT
AACTCTAAAA TGATTAAAGA AGGTGTATGT CAACTCGACA TTAAACTAGA TACAGGTCGA
ACACACCAAA TTCGTGTGCA CCTTGCTGAG ATTGGCCATC CAGTTATTGG GGATCCACTT
TATGGAACTT CAACATTACG ACAATTAGAG CTAAATAGTC ATCAAATTGA ATTTACTCAT
CCACTGACTC AAGAAATTAT TTCTGTAAGT CTAGATGATA AATAG
|
|---|
| Protein sequence | MKFTIPKQFN DYTLREIFQY LKLPKKDLHQ LNMSKEILIN KEYGTLLNNV KTGDHVEIPT
PNEVSNYLPS YRYAQIYYED DDLAIVMKPK GVKTHPNDLK ESNTLMNHVI YTVDSEYVEP
IHRLDQETVG LLIVAKNPLM KKILDRMLEY NEITRIYKAN VKALLPIKPQ TIDMPIGKDK
FHSNKRRISN TGQRAITHII NSKMIKEGVC QLDIKLDTGR THQIRVHLAE IGHPVIGDPL
YGTSTLRQLE LNSHQIEFTH PLTQEIISVS LDDK
|
|---|
| |