| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1704 |
|---|
| Symbol | |
|---|
| ID | 6176472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1903343 |
|---|
| End bp | 1904566 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681463 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001808405 |
|---|
| Protein GI | 172060753 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.225391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTT CAAGTTCGCA GAATGCCCCG CGGGGCAAGT CAAATCGCGA AGATTATAGC
CCAAGCGATC GGCCCGCCGA CGCCGCATCG GGGGATTCTC CCGATGCGGC GTCGGCCGCA
GGCGCGTTGC AACCGCCTGT CGTGCCGTCC GTGGCGGCCG ATGAGACGCC GCGCGTCGTC
GAAGTGCCGC TGTCGCTCGC GGGCGAACGC CTCGACAAGG CGCTTGCCCA GCTATTCCCC
GAATTCTCCC GCAGCCGCCT GCAGAGCTGG ATCGAGGCGC AGCGCGTGCT GATCGACGGC
GCGCCGGCGA AGATCCGCCA GCCGGTGCCG CTCGGCGCCA GGATCGAGCT CGTACCCGAC
CTGCTGCCGG AGCAGCTGGC GTTCACGCCG GAGCCGGTGC CGCTCGACGT GATCTACGAG
GACGATGCGC TCCTCGTCAT CAACAAGCCG GCCGGCGTCG TCGTCCATCC CGCCGCCGGC
AACTGGAGCG GCACGATTCT CAACGGGCTG CTGCATCGCT ACGGCGACGC CGCGGCCGGC
CTGCCGCGTG CCGGGATCGT ACACCGGCTC GACAAGGAAA CGTCCGGGCT GATGGTGGTC
GCGCGCACGC TTGCCGCGCA GACCGACCTC GTGCGCCAGT TGCAGGCGCG CACGGTGAAG
CGCCGCTATT TCGCGCTCGT GTGGGGCACG ATGCCCGAAG ACGGCACGAT CGACGCGCCG
ATCGGTCGTG ATCCGCGCGA GCGCACGCGC ATGGCCGTCG TCACCGGGGC GTCGGGCAAG
CCCGCGCGCA CGCATTTCCG TACGGTTGAC ACATGCCTGT GGCAACGTCA GCCGGTGTCC
GCGATCCAGT GCGACCTCGA AACCGGCCGC ACGCACCAGA TCCGCGTGCA CTGCGCGCAT
GTCGGGCATC CGCTGCTCGG TGATCCGGTG TACGGGCGCG CGCGCGGCAA GCGCTCGGTC
GCGCCGCTGC CGGACGGGTT TGCGCGGCAG GCGCTGCACG CGTGGCGGCT CGGCCTCGTG
CATCCGCTCA CGGGCAAGAC GATGCAGTGG CGCTGCCCGT TGCCGGACGA CATGAACGCG
CTCATCGCGG CGCTCGGTTT CGGGCAGGCC AGCGAGGAAT TCGACGATGA CGAAGGCGTC
TACGACGATG ACGATTTCGC CGGCGAATAT CAGGATCACG AGGATTACGA CGACGAGTCG
GATCCGGACG ACGAGGAGGA GTGA
|
|---|
| Protein sequence | MTRSSSQNAP RGKSNREDYS PSDRPADAAS GDSPDAASAA GALQPPVVPS VAADETPRVV
EVPLSLAGER LDKALAQLFP EFSRSRLQSW IEAQRVLIDG APAKIRQPVP LGARIELVPD
LLPEQLAFTP EPVPLDVIYE DDALLVINKP AGVVVHPAAG NWSGTILNGL LHRYGDAAAG
LPRAGIVHRL DKETSGLMVV ARTLAAQTDL VRQLQARTVK RRYFALVWGT MPEDGTIDAP
IGRDPRERTR MAVVTGASGK PARTHFRTVD TCLWQRQPVS AIQCDLETGR THQIRVHCAH
VGHPLLGDPV YGRARGKRSV APLPDGFARQ ALHAWRLGLV HPLTGKTMQW RCPLPDDMNA
LIAALGFGQA SEEFDDDEGV YDDDDFAGEY QDHEDYDDES DPDDEEE
|
|---|
| |