Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0606 |
Symbol | |
ID | 3970733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 658142 |
End bp | 659317 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637923722 |
Product | pseudouridine synthase RluD |
Protein accession | YP_530499 |
Protein GI | 90422129 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.32929 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACCA GAACGGCCGC CACCGCCAGC GCCGTGGTCA GGCCCGCAAT CAGCATCAAG CGACGCACCC GCGCGAACAG CGCGGCCTGC TCGGGGGTCG GTTCGGGCGC AACAGTTTCG GTCATGCAAG GCTCAATTTT GGAAAACCCG TTGGAAAATA CAGGTCGGCT GCTGGAAGTC ACCGTCGCCG GCGACGAGGG CGCGGTCCGG CTCGACCGCG TGCTGGCGCT GCGGGCGCCG GAACTGTCGC GGTCGCGGCT GAAGGCGCTG ATCCTCGCCG GCCAGGTCCG GTTGCGACCT GCCGACGCCA GCGCCGCCCT GCCGACCCCG CTTCGCGATC CCGCTTATCA TGTCGAAGCC GGCGATACGA TCACAATCGA CGTGCCGCCG GCGGTCGCCG CCGAGCCCGC CGGCGAGGCG ATCGCGCTCG ATATCGTCTA TGAGGACGAC GACATCATCG TCATCGACAA GCCGAAGGGC CTGGTGGTGC ATCCCGCCGC CGGCCACGAG ACCGGCACCC TGGTCAACGC CTTGATCGCG CATTGCGGCA ATAGCCTGTC CGGGATCGGC GGGGTGCGGC GGCCCGGCAT CGTGCACCGG CTCGACAAGG ACACCACCGG GTTGATGGTG GTCGCCAAGA ACGATAAGGC CCATAAATCC TTGAGCGAGC AGTTCGCCGA CCACGGCCGC ACCAACGAGA TGCGCCGCGG CTACAAGGCT TTCATCTGGG GCGCCCCGAA CCGGCCGCAC GGCACCGTCG ACGCGCCGAT CGACCGCCAC CCGTTCGCCC GCGAGAAGAT GGCGGTGCGC GACGGCGGCC GCGAGGCGGT GACGCATTGG GAGGTCGAGG ACACGTTTCT TGGCCGCGGT GGCAAGCCGG TGGTGAGCCT GTTGGCCTGC CAGCTGGAGA CCGGCCGCAC CCATCAGATC CGGGTGCATC TCGCCCATAT CGGCCACCCG CTGCTCGGCG ACGGCGTCTA TGGCCCGCAC TTCAAAACCA AGGCCAATGC ACTCAATCTG CCGGCGCAGG CCGCGCTCGC GGCGCTCGGC CGGCAGGCCT TGCACGCTTA TCTTTTGGCC CTCGAGCACC CGGTTTCCGG CGAGATTCTG GAGTGGACCG CCGAGCTGCC GGCCGACCTG GCGTTGTTGC GAACCGCTCT AAAAGCGACG GAATGA
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Protein sequence | MATRTAATAS AVVRPAISIK RRTRANSAAC SGVGSGATVS VMQGSILENP LENTGRLLEV TVAGDEGAVR LDRVLALRAP ELSRSRLKAL ILAGQVRLRP ADASAALPTP LRDPAYHVEA GDTITIDVPP AVAAEPAGEA IALDIVYEDD DIIVIDKPKG LVVHPAAGHE TGTLVNALIA HCGNSLSGIG GVRRPGIVHR LDKDTTGLMV VAKNDKAHKS LSEQFADHGR TNEMRRGYKA FIWGAPNRPH GTVDAPIDRH PFAREKMAVR DGGREAVTHW EVEDTFLGRG GKPVVSLLAC QLETGRTHQI RVHLAHIGHP LLGDGVYGPH FKTKANALNL PAQAALAALG RQALHAYLLA LEHPVSGEIL EWTAELPADL ALLRTALKAT E
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