| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0989 |
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| Symbol | |
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| ID | 5296883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1008030 |
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| End bp | 1008950 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640769273 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001306235 |
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| Protein GI | 150020881 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00899774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGAAA TTCAAGTAAC AGCACGGGAG AAGGGTTGGA GATTAGACAA ATTTATTCAA
GAAAAAGCAC CAGACTGGAT ATCGAGAACG TACATTCAAA GAGCGATCAA GAGTGGAATG
GTAACAGTAA ATAACGAAGA AAAAAAGCCA AGTTACAAAT TGAAGAATGG AGATGTTGTT
TCCTTTGAAC TTCCAGAAGA ACCAAAGAAA GTGGAAATAT TACCAGAAAA TCTACCTTTA
AAGATAATAT ACGAAGATAA AGACATTATT GTAGTTAATA AAGATCCTGG TGTGGTGACT
CATCCCACAC CAACTTTTCT TTCTGGCACA CTGGTAAATG CTTTAATGTA TCATTGTAAC
GATTTTCAAG GGATTGGTGG AGAATTAAGA CCGGGTATTG TTCATCGTTT AGATAAAGAT
ACCAGTGGTG TAATAGTTGT GGCCAAAAAT GATAAAGCGC ATCAAAGCTT ATCTATGCAA
TTTAAAGAGA GAAAAACAGA GAAAACTTAC ATTGCGATAG TTTCAGGGGA AGTGAAAAAA
AATTACGGAA CAATAGATGT ACCCTTGGGA CGTAATCCCG TTGTGCGCAC AAAAATTGCA
CCCGTTGATT GGGGAAAGAA TGCCATAACT TATTTTAAGG TTATTAAAAG ATTTAAAAAT
GCAACACTTT TGCTTGCCTT TCCAAAGACT GGTAGAACAC ACCAGATAAG AGTTCATATG
AAATACATTG GCCATCCACT TTTGGGTGAT GAGTTGTATG GTAGGGGAAA AAAGGATGAA
ATTTTTGGCG TAAAAAGACA AATGCTTCAT GCCTTAAAAC TTTCCTTTTA TCACCCTTCT
ACCAATGAAA AGATGATATT TGTAGCCCCA CTTCCAGAGG ATTTTAAGCA GGTTATAAGA
AATTTGGCGG AAATTGGTTA A
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| Protein sequence | MLEIQVTARE KGWRLDKFIQ EKAPDWISRT YIQRAIKSGM VTVNNEEKKP SYKLKNGDVV
SFELPEEPKK VEILPENLPL KIIYEDKDII VVNKDPGVVT HPTPTFLSGT LVNALMYHCN
DFQGIGGELR PGIVHRLDKD TSGVIVVAKN DKAHQSLSMQ FKERKTEKTY IAIVSGEVKK
NYGTIDVPLG RNPVVRTKIA PVDWGKNAIT YFKVIKRFKN ATLLLAFPKT GRTHQIRVHM
KYIGHPLLGD ELYGRGKKDE IFGVKRQMLH ALKLSFYHPS TNEKMIFVAP LPEDFKQVIR
NLAEIG
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