| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1594 |
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| Symbol | |
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| ID | 4921199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1827362 |
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| End bp | 1828351 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163156 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001093720 |
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| Protein GI | 127512523 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0260553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0130241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCAGCT TGAAAGAGAC AAGGCGTAGC ATGAACAATC AACAAGCGTT AAATAAAGTC
GAACTGGTAA CGATCGACGA GGATAACCTC GGCCAGCGAA TCGATAATTT TCTGGTCACT
AAACTGAAAG GCGTCCCTAA GAGCATGATC TACCGTATCG TGCGTAAGGG CGAGGTGCGC
GTCAATAAGA AGCGGATCAA GCCCGAATAT AAGCTGCAAG ACGGTGATAT AGTGCGAATC
CCGCCTGTTC GCGTCTCCGC AAGCGAGGAC AAGCCAGGCC CAAGTGCCAA GTTGACTAAG
GTGTCGCAGC TCGAGGGGCG TATCCTGTTT GAAGACAAGG CCATCATAGT GCTTAACAAG
CCCGCGGGCA TTGCGGTTCA TGGGGGCAGT GGCGTGGATT TCGGTGTGAT TGAGGCGATG
CGCTCGCTCA GACCGCAGCA GAAGTTTCTC GAACTGGTTC ACCGCTTGGA TAAGGAAACC
TCGGGCGTCT TGTTGATCGC CAAGAAGCGC CGCGCGCTTA AACACCTGCA CGATCAGCTG
CGTTACAAGA AGATGCAGAA GGACTACATG GCCTTGGTTC GTGGAGAGTG GCAAAACCAT
GACAAGGTGA TCAATGCGCC GCTGTTGAAA CTCACCCTTA AATCGGGCGA GCGTATCGTG
CGGGTCAACC AGGAGGGTAA ACCCTCGGAA ACCCGTTTTA AGATAATGCA GCGTTATCAA
GGTGCCACCC TGGTGCAGGC CAGTCCGGTT ACCGGACGTA CCCATCAGAT CCGTGTGCAT
TGCCAGTATG CCGGTCACCC CATCGCCTGT GACGAGAAAT ACAGCGAGCA GAAGTTCGAT
GATGCCATGC GCGAGTTGGG CCTCAATCGT CTCTTTCTCC ATGCCGCCCA GCTGAAATTT
ACCCATCCGG TATCGGAAGA GGTGATGCAG GTGAAGGCGC CACTGGATAA GGCACTACAA
GACTTGTTGA ATAAATTGGA TAAGGCATGA
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| Protein sequence | MCSLKETRRS MNNQQALNKV ELVTIDEDNL GQRIDNFLVT KLKGVPKSMI YRIVRKGEVR
VNKKRIKPEY KLQDGDIVRI PPVRVSASED KPGPSAKLTK VSQLEGRILF EDKAIIVLNK
PAGIAVHGGS GVDFGVIEAM RSLRPQQKFL ELVHRLDKET SGVLLIAKKR RALKHLHDQL
RYKKMQKDYM ALVRGEWQNH DKVINAPLLK LTLKSGERIV RVNQEGKPSE TRFKIMQRYQ
GATLVQASPV TGRTHQIRVH CQYAGHPIAC DEKYSEQKFD DAMRELGLNR LFLHAAQLKF
THPVSEEVMQ VKAPLDKALQ DLLNKLDKA
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