Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | A9601_02111 |
Symbol | rluD |
ID | 4716895 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. AS9601 |
Kingdom | Bacteria |
Replicon accession | NC_008816 |
Strand | - |
Start bp | 196692 |
End bp | 197651 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 640077910 |
Product | putative pseudouridylate synthase specific to ribosomal large subunit |
Protein accession | YP_001008606 |
Protein GI | 123967748 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.496147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTAA ATAATCAAAA TTCTTTCGGC ATTGGAGAAG GTGAGCTTAT AGAAATTATT TATGAGCTAC CTCTTCCTAT GAGGCTAGAC AGATGGTTGG TAAGTAAAAG GCCAGAACAA AGTAGAGCAA GAATTCAACA TTTTATAAAT TCAGGTTTAG TACTTGTAAA CTATAAGACT GCGAAAGCAA AGACCCCATT AAAAAATGGC GACAATATTC AAATATGGAT GCCTCCTCCA GAACCTCTTA TTTATTTGAA ACCTGAAAAA ATGGATTTAA ATATCCTTTT TGAAGACGAG CACATCATAG TAATTAATAA ACAATCAGGA CTAATTGTTC ATCCAGCCCC TGGACACAAA TCTGGAACTT TAGTGAATGG ATTACTTTTT CACTGTAAAG ATCTACCTGG AATTAATGGG AAATTAAGAC CTGGGATTGT TCACAGATTA GATAAAGATA CCTCCGGATG TATGGTTGTT GCAAAAAGCC AAGAGGCATT AGTAAATCTC CAGAAACAAA TTAAAGAAAA AATAGCATCA CGCGAATATA TTGCAGTAAT TCATGGAGCA CCGAATTCTG AAGAAGGCCA AATAGTGGGA AACATTGGCA GAGATAAATT AAATAGATTG AAATATAAAG TAGTTGAAGA AACTTCAGGA AGGTATGCCT GTACCTATTG GAAATTAGAA GAAAGATTTG GCAATTACTC ATTAATGAGT TTCAAGCTAG ATACGGGGCG AACGCATCAA ATAAGAGTAC ATTGCGCTCA CATTAATCAT CCAATTGTGG GTGATCCGTT ATATGGAAGA TGTAAAAAAC TACCATGTAA ATTAGATGGC CAAGCTTTAC ACGCCATTAA GCTTGGACTT ATACATCCAA TAAATGGTAA AGAAATGATA TTTGAATCAG AATTACCATT AGATTTTCAA AAATTACTAA GTGTTCTTAA AATTAAATAA
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Protein sequence | MELNNQNSFG IGEGELIEII YELPLPMRLD RWLVSKRPEQ SRARIQHFIN SGLVLVNYKT AKAKTPLKNG DNIQIWMPPP EPLIYLKPEK MDLNILFEDE HIIVINKQSG LIVHPAPGHK SGTLVNGLLF HCKDLPGING KLRPGIVHRL DKDTSGCMVV AKSQEALVNL QKQIKEKIAS REYIAVIHGA PNSEEGQIVG NIGRDKLNRL KYKVVEETSG RYACTYWKLE ERFGNYSLMS FKLDTGRTHQ IRVHCAHINH PIVGDPLYGR CKKLPCKLDG QALHAIKLGL IHPINGKEMI FESELPLDFQ KLLSVLKIK
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