More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_1005 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_1005  two component transcriptional regulator, winged helix family  100 
 
 
227 aa  457  9.999999999999999e-129  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000255449  n/a   
 
 
-
 
NC_009253  Dred_0323  two component transcriptional regulator  78.32 
 
 
227 aa  380  1e-104  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  48.21 
 
 
236 aa  214  7e-55  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  47.77 
 
 
240 aa  213  1.9999999999999998e-54  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  47.51 
 
 
233 aa  209  2e-53  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  47.51 
 
 
233 aa  208  7e-53  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  46.76 
 
 
224 aa  207  1e-52  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.67 
 
 
239 aa  206  2e-52  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  48.67 
 
 
242 aa  206  3e-52  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_013510  Tcur_0578  two component transcriptional regulator, winged helix family  46.22 
 
 
244 aa  202  2e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  48.39 
 
 
225 aa  203  2e-51  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  43.44 
 
 
248 aa  202  5e-51  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  47.25 
 
 
228 aa  201  9.999999999999999e-51  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  45.54 
 
 
406 aa  201  9.999999999999999e-51  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  46.76 
 
 
224 aa  199  3e-50  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  45.58 
 
 
237 aa  199  3.9999999999999996e-50  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  44.34 
 
 
252 aa  198  6e-50  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  44.55 
 
 
235 aa  197  1.0000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  46.76 
 
 
224 aa  197  1.0000000000000001e-49  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  43.24 
 
 
246 aa  197  1.0000000000000001e-49  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  45 
 
 
236 aa  197  1.0000000000000001e-49  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  46.3 
 
 
224 aa  197  1.0000000000000001e-49  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1377  two component transcriptional regulator, winged helix family  47.73 
 
 
225 aa  196  2.0000000000000003e-49  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000000301655 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.27 
 
 
239 aa  196  3e-49  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  44.44 
 
 
243 aa  195  5.000000000000001e-49  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2604  response regulator receiver  43.23 
 
 
244 aa  194  1e-48  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88392  n/a   
 
 
-
 
NC_013521  Sked_32700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.55 
 
 
271 aa  194  1e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.442824  normal  0.485424 
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  44.89 
 
 
273 aa  193  1e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_013441  Gbro_4233  response regulator receiver  43.23 
 
 
244 aa  194  1e-48  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  42.86 
 
 
223 aa  194  1e-48  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_013595  Sros_8872  response regulator receiver protein  46.61 
 
 
234 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.347509  normal 
 
 
-
 
NC_008146  Mmcs_4590  two component transcriptional regulator  44.34 
 
 
239 aa  192  3e-48  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10772  two component system response transcriptional positive regulator phoP  44.34 
 
 
247 aa  192  3e-48  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.864575 
 
 
-
 
NC_008541  Arth_0784  two component transcriptional regulator  47.27 
 
 
239 aa  192  3e-48  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4678  two component transcriptional regulator  44.34 
 
 
239 aa  192  3e-48  Mycobacterium sp. KMS  Bacteria  normal  0.337028  normal  0.895878 
 
 
-
 
NC_009077  Mjls_4973  two component transcriptional regulator  44.34 
 
 
239 aa  192  3e-48  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2637  two component transcriptional regulator, winged helix family  46.43 
 
 
227 aa  192  4e-48  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  45.13 
 
 
236 aa  192  5e-48  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  42.67 
 
 
231 aa  192  5e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  43.95 
 
 
237 aa  192  5e-48  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  46.08 
 
 
224 aa  191  5e-48  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_013441  Gbro_0822  response regulator receiver  43.56 
 
 
241 aa  191  7e-48  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0530683  n/a   
 
 
-
 
NC_013946  Mrub_1103  two component transcriptional regulator, winged helix family  46.76 
 
 
227 aa  190  1e-47  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5144  two component transcriptional regulator, winged helix family  45.25 
 
 
236 aa  191  1e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.204078  normal  0.858106 
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  42.79 
 
 
233 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  44.75 
 
 
235 aa  190  2e-47  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1581  two component transcriptional regulator  43.44 
 
 
238 aa  189  2e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0899  two component transcriptional regulator, winged helix family  48.64 
 
 
236 aa  189  2.9999999999999997e-47  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.383063 
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  42.99 
 
 
245 aa  188  5e-47  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_008726  Mvan_5175  two component transcriptional regulator  42.99 
 
 
236 aa  188  5e-47  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.55 
 
 
236 aa  188  7e-47  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
NC_013216  Dtox_3055  two component transcriptional regulator, winged helix family  43.05 
 
 
227 aa  187  8e-47  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.703147  hitchhiker  0.000223036 
 
 
-
 
NC_013517  Sterm_2324  two component transcriptional regulator, winged helix family  47.09 
 
 
223 aa  187  9e-47  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.237639  n/a   
 
 
-
 
NC_013093  Amir_1724  two component transcriptional regulator, winged helix family  45.45 
 
 
243 aa  187  9e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  43.44 
 
 
245 aa  187  1e-46  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal 
 
 
-
 
NC_011830  Dhaf_2231  two component transcriptional regulator, winged helix family  46.3 
 
 
226 aa  187  1e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  44.49 
 
 
234 aa  186  2e-46  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_009338  Mflv_2266  two component transcriptional regulator  43.86 
 
 
249 aa  186  2e-46  Mycobacterium gilvum PYR-GCK  Bacteria  decreased coverage  0.00896474  normal 
 
 
-
 
NC_008726  Mvan_4429  two component transcriptional regulator  43.86 
 
 
250 aa  187  2e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.133228  normal 
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  41.55 
 
 
222 aa  186  3e-46  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4688  two component transcriptional regulator, winged helix family  43.69 
 
 
252 aa  186  3e-46  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  46.4 
 
 
239 aa  186  3e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  46.05 
 
 
225 aa  185  5e-46  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.1 
 
 
238 aa  185  6e-46  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_011831  Cagg_3265  two component transcriptional regulator, winged helix family  42.86 
 
 
245 aa  185  6e-46  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.45002  normal 
 
 
-
 
NC_007604  Synpcc7942_1873  two component transcriptional regulator  43.98 
 
 
226 aa  184  9e-46  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  45.29 
 
 
223 aa  184  9e-46  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  43.53 
 
 
239 aa  183  1.0000000000000001e-45  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_008146  Mmcs_3926  two component transcriptional regulator  42.92 
 
 
254 aa  182  3e-45  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  42.79 
 
 
286 aa  182  3e-45  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_008705  Mkms_4000  two component transcriptional regulator  42.92 
 
 
254 aa  182  3e-45  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3941  two component transcriptional regulator  42.92 
 
 
254 aa  182  3e-45  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0990172 
 
 
-
 
NC_009921  Franean1_6507  two component transcriptional regulator  42.22 
 
 
270 aa  182  5.0000000000000004e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0763131  normal  0.20607 
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  43.64 
 
 
228 aa  181  6e-45  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  44.2 
 
 
241 aa  181  6e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_013411  GYMC61_0523  two component transcriptional regulator, winged helix family  44.09 
 
 
224 aa  181  7e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  44.44 
 
 
230 aa  181  8.000000000000001e-45  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  42.36 
 
 
236 aa  181  1e-44  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  44.19 
 
 
228 aa  181  1e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A1191  transcriptional regulatory protein YedW  42.92 
 
 
226 aa  181  1e-44  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  44.14 
 
 
229 aa  180  1e-44  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_008541  Arth_0655  two component transcriptional regulator  42.47 
 
 
246 aa  181  1e-44  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  42.41 
 
 
236 aa  180  1e-44  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_011149  SeAg_B1055  transcriptional regulatory protein YedW  42.92 
 
 
226 aa  180  2e-44  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  40.81 
 
 
241 aa  179  2e-44  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_011094  SeSA_A1160  transcriptional regulatory protein YedW  42.92 
 
 
226 aa  180  2e-44  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.728212 
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  43.69 
 
 
237 aa  180  2e-44  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  44.14 
 
 
230 aa  180  2e-44  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  40.99 
 
 
231 aa  180  2e-44  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4549  two component transcriptional regulator, winged helix family  44.29 
 
 
221 aa  180  2e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.703481  normal 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  40.25 
 
 
246 aa  179  2.9999999999999997e-44  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_011886  Achl_0804  two component transcriptional regulator, winged helix family  42.01 
 
 
246 aa  179  2.9999999999999997e-44  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_1056  DNA-binding response regulator  41.36 
 
 
226 aa  179  2.9999999999999997e-44  Clostridium perfringens ATCC 13124  Bacteria  normal  0.775205  n/a   
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  41.05 
 
 
235 aa  179  4e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_009921  Franean1_6496  two component transcriptional regulator  43.84 
 
 
231 aa  178  4.999999999999999e-44  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00132974  normal  0.338684 
 
 
-
 
NC_011205  SeD_A1171  transcriptional regulatory protein YedW  42.47 
 
 
226 aa  178  4.999999999999999e-44  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  43.56 
 
 
235 aa  178  8e-44  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  40.62 
 
 
242 aa  178  8e-44  Frankia sp. CcI3  Bacteria  normal  normal  0.925989 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  42.49 
 
 
247 aa  177  9e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_012803  Mlut_22060  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.29 
 
 
254 aa  177  1e-43  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0729677  n/a   
 
 
-
 
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