More than 300 homologs were found in PanDaTox collection
for query gene Dtox_3055 on replicon NC_013216
Organism: Desulfotomaculum acetoxidans DSM 771



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013216  Dtox_3055  two component transcriptional regulator, winged helix family  100 
 
 
227 aa  457  9.999999999999999e-129  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.703147  hitchhiker  0.000223036 
 
 
-
 
NC_008261  CPF_1056  DNA-binding response regulator  63.23 
 
 
226 aa  274  9e-73  Clostridium perfringens ATCC 13124  Bacteria  normal  0.775205  n/a   
 
 
-
 
NC_011830  Dhaf_2231  two component transcriptional regulator, winged helix family  59.64 
 
 
226 aa  273  2.0000000000000002e-72  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  60.27 
 
 
228 aa  271  5.000000000000001e-72  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2492  two component transcriptional regulator  54.26 
 
 
224 aa  239  2.9999999999999997e-62  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.22217  n/a   
 
 
-
 
NC_013203  Apar_1044  two component transcriptional regulator, winged helix family  56.09 
 
 
234 aa  238  5e-62  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0523  two component transcriptional regulator, winged helix family  54.05 
 
 
224 aa  236  2e-61  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  54.5 
 
 
224 aa  235  4e-61  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_008527  LACR_1701  DNA-binding response regulator  51.54 
 
 
230 aa  235  4e-61  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.00672994  n/a   
 
 
-
 
NC_003909  BCE_2675  DNA-binding response regulator  53.36 
 
 
224 aa  234  6e-61  Bacillus cereus ATCC 10987  Bacteria  normal  0.0180828  n/a   
 
 
-
 
NC_011725  BCB4264_A2673  DNA-binding response regulator  52.91 
 
 
224 aa  233  1.0000000000000001e-60  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  53.39 
 
 
228 aa  232  3e-60  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  50.67 
 
 
224 aa  233  3e-60  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_013517  Sterm_2324  two component transcriptional regulator, winged helix family  50.9 
 
 
223 aa  231  9e-60  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.237639  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  49.78 
 
 
224 aa  230  1e-59  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS2056  DNA-binding response regulator  54.91 
 
 
227 aa  228  4e-59  Bacillus anthracis str. Sterne  Bacteria  normal  0.413172  n/a   
 
 
-
 
NC_011773  BCAH820_2240  DNA-binding response regulator  54.91 
 
 
227 aa  228  4e-59  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.85177e-28 
 
 
-
 
NC_013170  Ccur_00280  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  52.17 
 
 
234 aa  228  4e-59  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.0000064956 
 
 
-
 
NC_007530  GBAA_2212  DNA-binding response regulator  54.91 
 
 
227 aa  228  4e-59  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  50.68 
 
 
224 aa  228  6e-59  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_004116  SAG1625  DNA-binding response regulator CsrR  51.56 
 
 
229 aa  224  6e-58  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.137799  n/a   
 
 
-
 
NC_011725  BCB4264_A2194  DNA-binding response regulator  54.02 
 
 
227 aa  224  9e-58  Bacillus cereus B4264  Bacteria  hitchhiker  0.00702475  n/a   
 
 
-
 
NC_009487  SaurJH9_1476  two component transcriptional regulator  51.58 
 
 
219 aa  224  1e-57  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  51.58 
 
 
219 aa  224  1e-57  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_008531  LEUM_1732  DNA-binding response regulator  48.25 
 
 
229 aa  224  1e-57  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.019008  n/a   
 
 
-
 
NC_009513  Lreu_1228  two component transcriptional regulator  48.02 
 
 
228 aa  221  6e-57  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000325236  n/a   
 
 
-
 
NC_013515  Smon_0737  two component transcriptional regulator, winged helix family  48.2 
 
 
224 aa  220  9.999999999999999e-57  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  48.42 
 
 
225 aa  218  7e-56  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  45.78 
 
 
236 aa  217  1e-55  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_008532  STER_0354  DNA-binding response regulator  49.33 
 
 
229 aa  214  5.9999999999999996e-55  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.00000041064  n/a   
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  48.2 
 
 
224 aa  214  9.999999999999999e-55  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  50.45 
 
 
240 aa  211  5.999999999999999e-54  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_008530  LGAS_1398  DNA-binding response regulator  48.7 
 
 
246 aa  211  7.999999999999999e-54  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000000000136334  hitchhiker  8.832960000000001e-24 
 
 
-
 
NC_002976  SERP0989  DNA-binding response regulator ArlR  50.91 
 
 
219 aa  207  1e-52  Staphylococcus epidermidis RP62A  Bacteria  normal  0.110636  n/a   
 
 
-
 
NC_008528  OEOE_0488  DNA-binding response regulator  48.25 
 
 
228 aa  206  2e-52  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  49.55 
 
 
226 aa  206  3e-52  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  46.85 
 
 
223 aa  204  6e-52  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  49.1 
 
 
226 aa  204  7e-52  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  46.85 
 
 
223 aa  204  1e-51  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  51.8 
 
 
224 aa  204  1e-51  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0451  DNA-binding response regulator  50.45 
 
 
224 aa  203  2e-51  Geobacter sulfurreducens PCA  Bacteria  normal  0.313098  n/a   
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  47.98 
 
 
225 aa  203  2e-51  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  49.09 
 
 
225 aa  202  5e-51  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  46.4 
 
 
223 aa  201  6e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  46.4 
 
 
223 aa  201  6e-51  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  46.4 
 
 
223 aa  201  6e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  47.09 
 
 
223 aa  201  7e-51  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  49.78 
 
 
224 aa  199  1.9999999999999998e-50  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_010070  Bmul_6295  two component heavy metal response transcriptional regulator  45.5 
 
 
223 aa  199  1.9999999999999998e-50  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.803537  normal  0.219108 
 
 
-
 
NC_008752  Aave_3002  two component transcriptional regulator  44.74 
 
 
230 aa  199  1.9999999999999998e-50  Acidovorax citrulli AAC00-1  Bacteria  normal  0.67465  normal  0.369251 
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  46.4 
 
 
224 aa  199  3e-50  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  44 
 
 
230 aa  199  3e-50  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_007604  Synpcc7942_1873  two component transcriptional regulator  45.33 
 
 
226 aa  198  3.9999999999999996e-50  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  47.06 
 
 
225 aa  199  3.9999999999999996e-50  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  48.42 
 
 
225 aa  199  3.9999999999999996e-50  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009467  Acry_3106  two component heavy metal response transcriptional regulator  45.74 
 
 
225 aa  198  5e-50  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4293  two component transcriptional regulator  50.9 
 
 
224 aa  198  6e-50  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000934276  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  43.05 
 
 
236 aa  198  6e-50  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  45.45 
 
 
225 aa  198  6e-50  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_010814  Glov_0998  two component transcriptional regulator, winged helix family  46.85 
 
 
223 aa  198  7e-50  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  47.96 
 
 
225 aa  198  7e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  45.95 
 
 
224 aa  197  7.999999999999999e-50  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_014212  Mesil_2637  two component transcriptional regulator, winged helix family  48.44 
 
 
227 aa  197  7.999999999999999e-50  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1103  two component transcriptional regulator, winged helix family  48.18 
 
 
227 aa  197  9e-50  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  49.33 
 
 
224 aa  197  1.0000000000000001e-49  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  48.67 
 
 
226 aa  197  1.0000000000000001e-49  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  47.06 
 
 
225 aa  197  1.0000000000000001e-49  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  45.95 
 
 
224 aa  197  1.0000000000000001e-49  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  46.64 
 
 
225 aa  196  2.0000000000000003e-49  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1497  heavy metal response regulator  45.25 
 
 
228 aa  196  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  45.5 
 
 
224 aa  196  2.0000000000000003e-49  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  45.95 
 
 
228 aa  196  2.0000000000000003e-49  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  47.51 
 
 
225 aa  196  2.0000000000000003e-49  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3379  two component heavy metal response transcriptional regulator  45.21 
 
 
223 aa  196  2.0000000000000003e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  45.95 
 
 
224 aa  196  2.0000000000000003e-49  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  46.19 
 
 
226 aa  197  2.0000000000000003e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  47.51 
 
 
225 aa  196  3e-49  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  45.29 
 
 
233 aa  196  3e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  47.51 
 
 
225 aa  196  3e-49  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.41 
 
 
226 aa  196  3e-49  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  47.06 
 
 
238 aa  196  3e-49  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  47.51 
 
 
225 aa  196  3e-49  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
CP001637  EcDH1_1682  two component heavy metal response transcriptional regulator, winged helix family  44.09 
 
 
260 aa  195  4.0000000000000005e-49  Escherichia coli DH1  Bacteria  decreased coverage  0.000000000000361446  n/a   
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  45.05 
 
 
228 aa  196  4.0000000000000005e-49  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  45.05 
 
 
228 aa  196  4.0000000000000005e-49  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  45.74 
 
 
228 aa  195  4.0000000000000005e-49  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
CP001509  ECD_01884  predicted DNA-binding response regulator in two-component system with YedV  44.09 
 
 
223 aa  195  5.000000000000001e-49  Escherichia coli BL21(DE3)  Bacteria  unclonable  0.000000533293  n/a   
 
 
-
 
NC_002939  GSU2946  DNA-binding heavy metal response regulator  47.3 
 
 
223 aa  195  5.000000000000001e-49  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1160  transcriptional regulatory protein YedW  46.15 
 
 
226 aa  195  5.000000000000001e-49  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.728212 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  43.11 
 
 
230 aa  195  5.000000000000001e-49  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  44.8 
 
 
224 aa  195  5.000000000000001e-49  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  44 
 
 
230 aa  195  5.000000000000001e-49  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_011149  SeAg_B1055  transcriptional regulatory protein YedW  46.15 
 
 
226 aa  195  5.000000000000001e-49  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01874  hypothetical protein  44.09 
 
 
223 aa  195  5.000000000000001e-49  Escherichia coli BL21  Bacteria  unclonable  0.00000061937  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  42.67 
 
 
239 aa  195  5.000000000000001e-49  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3559  two component heavy metal response transcriptional regulator, winged helix family  45.05 
 
 
225 aa  195  5.000000000000001e-49  Variovorax paradoxus S110  Bacteria  normal  0.710681  n/a   
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  45.29 
 
 
228 aa  195  5.000000000000001e-49  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_011080  SNSL254_A1191  transcriptional regulatory protein YedW  46.15 
 
 
226 aa  194  6e-49  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0197  transcriptional activator protein, response regulator  47.53 
 
 
227 aa  194  7e-49  Aliivibrio salmonicida LFI1238  Bacteria  hitchhiker  0.0086442  n/a   
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  46.12 
 
 
225 aa  194  8.000000000000001e-49  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
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