More than 300 homologs were found in PanDaTox collection
for query gene Tpau_1872 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008786  Veis_1682  carbamoyl-phosphate synthase L chain, ATP-binding  50.83 
 
 
1097 aa  906    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3842  pyruvate carboxylase., propionyl-CoA carboxylase  53.2 
 
 
1090 aa  1018    Pseudomonas mendocina ymp  Bacteria  normal  0.735507  normal 
 
 
-
 
NC_012791  Vapar_4792  Carbamoyl-phosphate synthase L chain ATP-binding  53.54 
 
 
1098 aa  994    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2997  pyruvate carboxylase., propionyl-CoA carboxylase  52.27 
 
 
1112 aa  965    Ralstonia eutropha JMP134  Bacteria  normal  0.717985  n/a   
 
 
-
 
NC_007348  Reut_B3892  pyruvate carboxylase., propionyl-CoA carboxylase  49.82 
 
 
1105 aa  924    Ralstonia eutropha JMP134  Bacteria  normal  0.222877  n/a   
 
 
-
 
NC_010682  Rpic_2413  Carbamoyl-phosphate synthase L chain ATP-binding  52.4 
 
 
1103 aa  1004    Ralstonia pickettii 12J  Bacteria  normal  0.370889  normal 
 
 
-
 
NC_009656  PSPA7_3940  biotin carboxylase  52.37 
 
 
1095 aa  957    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1073  carbamoyl-phosphate synthase L chain ATP-binding  51.79 
 
 
1097 aa  938    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.398596 
 
 
-
 
NC_009092  Shew_2867  pyruvate carboxylase, propionyl-CoA carboxylase  45.45 
 
 
1094 aa  924    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2692  carbamoyl-phosphate synthase L chain ATP-binding  49.31 
 
 
1091 aa  976    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.246578  normal 
 
 
-
 
NC_007778  RPB_0228  pyruvate carboxylase  49.68 
 
 
1102 aa  927    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0325  putative carbamoyl-phosphate synthase/carboxyltransferase  47.2 
 
 
1033 aa  870    Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00413632  normal  0.277217 
 
 
-
 
NC_007958  RPD_0602  carbamoyl-phosphate synthase L chain, ATP-binding  51.15 
 
 
1102 aa  944    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4069  acetyl-CoA carboxylase (biotin carboxylase and carboxyl transferase domains) / biotin carboxyl carrier protein  52.11 
 
 
1126 aa  956    Cupriavidus metallidurans CH34  Bacteria  normal  0.0299228  normal 
 
 
-
 
NC_007974  Rmet_4971  putative carbamoyl-phosphate synthase L chain, ATP-binding  50.55 
 
 
1152 aa  905    Cupriavidus metallidurans CH34  Bacteria  normal  0.266349  normal  0.508617 
 
 
-
 
NC_012856  Rpic12D_2019  Carbamoyl-phosphate synthase L chain ATP-binding  52.21 
 
 
1103 aa  968    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1636  Carbamoyl-phosphate synthase L chain ATP-binding  51.1 
 
 
1103 aa  947    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_46320  putative pyruvate carboxylase  51.95 
 
 
1095 aa  946    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.948302  normal  0.0234216 
 
 
-
 
NC_014158  Tpau_1872  Carbamoyl-phosphate synthase L chain ATP- binding protein  100 
 
 
1054 aa  2061    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4464  pyruvate carboxylase., methylmalonyl-CoA carboxytransferase  55.18 
 
 
1067 aa  982    Caulobacter sp. K31  Bacteria  normal  0.0495259  normal 
 
 
-
 
NC_013510  Tcur_1862  carboxyl transferase  60.85 
 
 
602 aa  618  1e-175  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00333639  n/a   
 
 
-
 
NC_007908  Rfer_3899  propionyl-CoA carboxylase  55.94 
 
 
610 aa  591  1e-167  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1889  propionyl-CoA carboxylase  56.57 
 
 
519 aa  564  1.0000000000000001e-159  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2679  propionyl-CoA carboxylase  57.86 
 
 
503 aa  527  1e-148  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2710  propionyl-CoA carboxylase  58.07 
 
 
503 aa  529  1e-148  Mycobacterium sp. JLS  Bacteria  normal  0.595961  normal  0.61988 
 
 
-
 
NC_008705  Mkms_2724  propionyl-CoA carboxylase  57.86 
 
 
503 aa  527  1e-148  Mycobacterium sp. KMS  Bacteria  normal  normal  0.173098 
 
 
-
 
NC_008726  Mvan_0066  propionyl-CoA carboxylase  56.79 
 
 
519 aa  523  1e-147  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.229003 
 
 
-
 
NC_009338  Mflv_0781  propionyl-CoA carboxylase  57.2 
 
 
518 aa  506  9.999999999999999e-143  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.576525  normal 
 
 
-
 
NC_013739  Cwoe_2712  carboxyl transferase  54.91 
 
 
524 aa  509  9.999999999999999e-143  Conexibacter woesei DSM 14684  Bacteria  normal  0.0757047  normal  0.0196449 
 
 
-
 
NC_008228  Patl_1271  propionyl-CoA carboxylase  43.29 
 
 
600 aa  474  1e-132  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_05850  acetyl/propionyl-CoA carboxylase, alpha subunit  40.07 
 
 
591 aa  351  4e-95  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.79631 
 
 
-
 
NC_007577  PMT9312_0062  acetyl-CoA carboxylase biotin carboxylase subunit  42.23 
 
 
448 aa  351  5e-95  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2022  acetyl-CoA carboxylase, biotin carboxylase  42.76 
 
 
446 aa  350  1e-94  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0711095  n/a   
 
 
-
 
NC_007575  Suden_0622  biotin carboxylase-like  39.43 
 
 
485 aa  349  2e-94  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4784  carbamoyl-phosphate synthase L chain, ATP-binding  39.23 
 
 
599 aa  345  4e-93  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.324654  normal 
 
 
-
 
NC_009091  P9301_00711  acetyl-CoA carboxylase biotin carboxylase subunit  41.92 
 
 
449 aa  344  5e-93  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_00721  acetyl-CoA carboxylase biotin carboxylase subunit  42.14 
 
 
449 aa  343  9e-93  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.249054  n/a   
 
 
-
 
NC_007335  PMN2A_1423  acetyl-CoA carboxylase biotin carboxylase subunit  42.7 
 
 
447 aa  342  2e-92  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0792  carbamoyl-phosphate synthase L chain ATP-binding  39.5 
 
 
583 aa  341  2.9999999999999998e-92  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00727726 
 
 
-
 
NC_007498  Pcar_2127  acetyl-CoA carboxylase/biotin carboxylase  42.98 
 
 
445 aa  341  4e-92  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1093  Carbamoyl-phosphate synthase L chain ATP- binding  45.71 
 
 
459 aa  341  5e-92  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_01241  acetyl-CoA carboxylase biotin carboxylase subunit  42.7 
 
 
447 aa  341  5e-92  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.114391  normal 
 
 
-
 
NC_008687  Pden_4144  pyruvate carboxylase  44.98 
 
 
1144 aa  340  7e-92  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.407783 
 
 
-
 
NC_004578  PSPTO_5381  biotin carboxylase/biotin carboxyl carrier protein  40.54 
 
 
579 aa  340  9.999999999999999e-92  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_1183  acetyl-CoA carboxylase, biotin carboxylase  41.79 
 
 
455 aa  339  1.9999999999999998e-91  Elusimicrobium minutum Pei191  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2602  acetyl-CoA carboxylase, biotin carboxylase  42.36 
 
 
447 aa  338  3.9999999999999995e-91  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.000536628  normal 
 
 
-
 
NC_008527  LACR_0696  pyruvate carboxylase  43.33 
 
 
1137 aa  337  5e-91  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1289  carbamoyl-phosphate synthase L chain, ATP-binding protein  38.77 
 
 
602 aa  337  7e-91  Mycobacterium sp. MCS  Bacteria  normal  0.252747  n/a   
 
 
-
 
NC_009077  Mjls_1325  carbamoyl-phosphate synthase L chain, ATP-binding  38.77 
 
 
602 aa  337  7e-91  Mycobacterium sp. JLS  Bacteria  normal  0.727992  normal 
 
 
-
 
NC_008705  Mkms_1306  carbamoyl-phosphate synthase L chain, ATP-binding  38.77 
 
 
602 aa  337  7e-91  Mycobacterium sp. KMS  Bacteria  normal  0.0707012  normal  0.142834 
 
 
-
 
NC_005945  BAS3859  pyruvate carboxylase  41.45 
 
 
1148 aa  336  1e-90  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_0421  acetyl-CoA carboxylase biotin carboxylase subunit  42.79 
 
 
448 aa  336  1e-90  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4157  pyruvate carboxylase  41.45 
 
 
1148 aa  336  1e-90  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.820084  n/a   
 
 
-
 
NC_011773  BCAH820_3962  pyruvate carboxylase  41.45 
 
 
1148 aa  336  1e-90  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_002976  SERP0704  pyruvate carboxylase  41.58 
 
 
1147 aa  336  2e-90  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3690  pyruvate carboxylase  41.45 
 
 
1148 aa  335  2e-90  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0521  acetyl-CoA carboxylase, biotin carboxylase  39.96 
 
 
448 aa  335  2e-90  Clostridium phytofermentans ISDg  Bacteria  normal  0.0922671  n/a   
 
 
-
 
NC_011772  BCG9842_B1190  pyruvate carboxylase  41.45 
 
 
1148 aa  336  2e-90  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  41.01 
 
 
446 aa  335  3e-90  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_013235  Namu_4233  Carbamoyl-phosphate synthase L chain ATP- binding  39.9 
 
 
594 aa  335  3e-90  Nakamurella multipartita DSM 44233  Bacteria  normal  0.213527  normal  0.607428 
 
 
-
 
NC_006274  BCZK3707  pyruvate carboxylase  41.45 
 
 
1148 aa  335  3e-90  Bacillus cereus E33L  Bacteria  normal  0.863258  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1043  Carbamoyl-phosphate synthase L chain ATP-binding  38.95 
 
 
476 aa  335  3e-90  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2028  pyruvate carboxylase  43.23 
 
 
1146 aa  334  5e-90  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3649  acetyl-CoA carboxylase biotin carboxylase subunit  42.39 
 
 
455 aa  334  6e-90  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.931684  normal  0.513161 
 
 
-
 
NC_003909  BCE_3994  pyruvate carboxylase  41.45 
 
 
1148 aa  334  6e-90  Bacillus cereus ATCC 10987  Bacteria  normal  0.882525  n/a   
 
 
-
 
NC_011658  BCAH187_A4065  pyruvate carboxylase  41.58 
 
 
1148 aa  333  7.000000000000001e-90  Bacillus cereus AH187  Bacteria  normal  0.0164116  n/a   
 
 
-
 
NC_011725  BCB4264_A4050  pyruvate carboxylase  41.23 
 
 
1148 aa  334  7.000000000000001e-90  Bacillus cereus B4264  Bacteria  normal  0.898796  n/a   
 
 
-
 
NC_008817  P9515_00691  acetyl-CoA carboxylase biotin carboxylase subunit  41.48 
 
 
449 aa  333  1e-89  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.36167  n/a   
 
 
-
 
NC_010424  Daud_1016  acetyl-CoA carboxylase, biotin carboxylase  44.1 
 
 
446 aa  333  1e-89  Candidatus Desulforudis audaxviator MP104C  Bacteria  unclonable  0.0000000161184  n/a   
 
 
-
 
NC_013131  Caci_0809  Carbamoyl-phosphate synthase L chain ATP- binding  39.83 
 
 
587 aa  333  1e-89  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0782  Carbamoyl-phosphate synthase L chain ATP- binding protein  39.02 
 
 
582 aa  332  3e-89  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.742429  normal 
 
 
-
 
NC_009674  Bcer98_2649  pyruvate carboxylase  41.27 
 
 
1148 aa  331  4e-89  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00733169  n/a   
 
 
-
 
NC_013411  GYMC61_1852  pyruvate carboxylase  43.48 
 
 
1147 aa  331  4e-89  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007516  Syncc9605_2259  acetyl-CoA carboxylase biotin carboxylase subunit  42.58 
 
 
448 aa  330  7e-89  Synechococcus sp. CC9605  Bacteria  normal  0.571536  normal  0.652272 
 
 
-
 
NC_012793  GWCH70_0980  pyruvate carboxylase  42.79 
 
 
1147 aa  330  8e-89  Geobacillus sp. WCH70  Bacteria  normal  0.125957  n/a   
 
 
-
 
NC_009972  Haur_4207  acetyl-CoA carboxylase, biotin carboxylase  37.21 
 
 
588 aa  330  1.0000000000000001e-88  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  42.51 
 
 
493 aa  329  1.0000000000000001e-88  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_008820  P9303_03221  acetyl-CoA carboxylase biotin carboxylase subunit  42.46 
 
 
448 aa  329  2.0000000000000001e-88  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_013922  Nmag_2123  Carbamoyl-phosphate synthase L chain ATP-binding protein  38.78 
 
 
592 aa  329  2.0000000000000001e-88  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  41.01 
 
 
446 aa  328  2.0000000000000001e-88  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_014212  Mesil_2028  acetyl-CoA carboxylase, biotin carboxylase  42.17 
 
 
446 aa  329  2.0000000000000001e-88  Meiothermus silvanus DSM 9946  Bacteria  normal  0.256761  normal 
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  42.14 
 
 
448 aa  329  2.0000000000000001e-88  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3773  pyruvate carboxylase  40.79 
 
 
1148 aa  329  2.0000000000000001e-88  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.333  n/a   
 
 
-
 
NC_008148  Rxyl_0036  acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase  46.74 
 
 
463 aa  328  2.0000000000000001e-88  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  40.57 
 
 
446 aa  329  2.0000000000000001e-88  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_011365  Gdia_2052  acetyl-CoA carboxylase biotin carboxylase subunit  43.89 
 
 
447 aa  328  3e-88  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1518  acetyl-CoA carboxylase biotin carboxylase subunit  41.48 
 
 
449 aa  328  3e-88  Ruegeria sp. TM1040  Bacteria  normal  0.0122051  normal  0.737322 
 
 
-
 
NC_007493  RSP_2090  pyruvate carboxylase  43.45 
 
 
1154 aa  328  4.0000000000000003e-88  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_09250  pyruvate carboxylase  46.2 
 
 
1127 aa  328  4.0000000000000003e-88  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.582484 
 
 
-
 
NC_009952  Dshi_2485  pyruvate carboxylase  43.45 
 
 
1145 aa  328  5e-88  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0765  pyruvate carboxylase  43.45 
 
 
1154 aa  327  5e-88  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.531635  normal 
 
 
-
 
NC_013162  Coch_0029  acetyl-CoA carboxylase, biotin carboxylase  40.88 
 
 
450 aa  327  6e-88  Capnocytophaga ochracea DSM 7271  Bacteria  decreased coverage  0.00270537  n/a   
 
 
-
 
NC_013512  Sdel_1847  Carbamoyl-phosphate synthase L chain ATP- binding protein  40.04 
 
 
481 aa  327  6e-88  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.252385  n/a   
 
 
-
 
NC_008639  Cpha266_0235  acetyl-CoA carboxylase, biotin carboxylase  41.32 
 
 
448 aa  327  8.000000000000001e-88  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5845  biotin carboxylase  39.63 
 
 
578 aa  327  1e-87  Agrobacterium vitis S4  Bacteria  normal  0.249832  n/a   
 
 
-
 
NC_010511  M446_5425  acetyl-CoA carboxylase, biotin carboxylase  42.79 
 
 
451 aa  327  1e-87  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.943443 
 
 
-
 
NC_009380  Strop_0849  carbamoyl-phosphate synthase L chain, ATP-binding  37.73 
 
 
583 aa  327  1e-87  Salinispora tropica CNB-440  Bacteria  normal  normal  0.650439 
 
 
-
 
NC_007204  Psyc_1227  putative acetyl-CoA carboxylase, biotin carboxylase  42.01 
 
 
453 aa  326  2e-87  Psychrobacter arcticus 273-4  Bacteria  normal  0.0132504  normal  0.103288 
 
 
-
 
NC_009428  Rsph17025_0677  pyruvate carboxylase  43.45 
 
 
1154 aa  326  2e-87  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00418471 
 
 
-
 
NC_009664  Krad_0532  Carbamoyl-phosphate synthase L chain ATP-binding  43.67 
 
 
575 aa  325  2e-87  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.290431  decreased coverage  0.00468194 
 
 
-
 
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