More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4971 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_2692  carbamoyl-phosphate synthase L chain ATP-binding  55.23 
 
 
1091 aa  1161    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.246578  normal 
 
 
-
 
NC_008786  Veis_1682  carbamoyl-phosphate synthase L chain, ATP-binding  59.91 
 
 
1097 aa  1224    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2997  pyruvate carboxylase., propionyl-CoA carboxylase  55.02 
 
 
1112 aa  1097    Ralstonia eutropha JMP134  Bacteria  normal  0.717985  n/a   
 
 
-
 
NC_007348  Reut_B3892  pyruvate carboxylase., propionyl-CoA carboxylase  88.54 
 
 
1105 aa  1894    Ralstonia eutropha JMP134  Bacteria  normal  0.222877  n/a   
 
 
-
 
NC_009092  Shew_2867  pyruvate carboxylase, propionyl-CoA carboxylase  48.44 
 
 
1094 aa  1024    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3940  biotin carboxylase  54.83 
 
 
1095 aa  1065    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0228  pyruvate carboxylase  54.03 
 
 
1102 aa  1071    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3842  pyruvate carboxylase., propionyl-CoA carboxylase  55.72 
 
 
1090 aa  1104    Pseudomonas mendocina ymp  Bacteria  normal  0.735507  normal 
 
 
-
 
NC_007908  Rfer_3899  propionyl-CoA carboxylase  64.2 
 
 
610 aa  771    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0325  putative carbamoyl-phosphate synthase/carboxyltransferase  45.9 
 
 
1033 aa  884    Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00413632  normal  0.277217 
 
 
-
 
NC_007958  RPD_0602  carbamoyl-phosphate synthase L chain, ATP-binding  54.09 
 
 
1102 aa  1083    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4069  acetyl-CoA carboxylase (biotin carboxylase and carboxyl transferase domains) / biotin carboxyl carrier protein  71.8 
 
 
1126 aa  1533    Cupriavidus metallidurans CH34  Bacteria  normal  0.0299228  normal 
 
 
-
 
NC_007974  Rmet_4971  putative carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
1152 aa  2311    Cupriavidus metallidurans CH34  Bacteria  normal  0.266349  normal  0.508617 
 
 
-
 
NC_010682  Rpic_2413  Carbamoyl-phosphate synthase L chain ATP-binding  55.95 
 
 
1103 aa  1135    Ralstonia pickettii 12J  Bacteria  normal  0.370889  normal 
 
 
-
 
NC_012856  Rpic12D_2019  Carbamoyl-phosphate synthase L chain ATP-binding  54.98 
 
 
1103 aa  1090    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1073  carbamoyl-phosphate synthase L chain ATP-binding  60.9 
 
 
1097 aa  1259    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.398596 
 
 
-
 
NC_010338  Caul_4464  pyruvate carboxylase., methylmalonyl-CoA carboxytransferase  53.06 
 
 
1067 aa  978    Caulobacter sp. K31  Bacteria  normal  0.0495259  normal 
 
 
-
 
NC_014158  Tpau_1872  Carbamoyl-phosphate synthase L chain ATP- binding protein  50.55 
 
 
1054 aa  888    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_46320  putative pyruvate carboxylase  53.69 
 
 
1095 aa  1033    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.948302  normal  0.0234216 
 
 
-
 
NC_012791  Vapar_4792  Carbamoyl-phosphate synthase L chain ATP-binding  60.54 
 
 
1098 aa  1241    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1636  Carbamoyl-phosphate synthase L chain ATP-binding  54.36 
 
 
1103 aa  1077    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1889  propionyl-CoA carboxylase  58.19 
 
 
519 aa  620  1e-176  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1862  carboxyl transferase  58.46 
 
 
602 aa  617  1e-175  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00333639  n/a   
 
 
-
 
NC_013739  Cwoe_2712  carboxyl transferase  53.46 
 
 
524 aa  510  1e-143  Conexibacter woesei DSM 14684  Bacteria  normal  0.0757047  normal  0.0196449 
 
 
-
 
NC_009338  Mflv_0781  propionyl-CoA carboxylase  54.49 
 
 
518 aa  506  9.999999999999999e-143  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.576525  normal 
 
 
-
 
NC_008726  Mvan_0066  propionyl-CoA carboxylase  53.33 
 
 
519 aa  505  1e-141  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.229003 
 
 
-
 
NC_009077  Mjls_2710  propionyl-CoA carboxylase  52.75 
 
 
503 aa  489  1e-136  Mycobacterium sp. JLS  Bacteria  normal  0.595961  normal  0.61988 
 
 
-
 
NC_008705  Mkms_2724  propionyl-CoA carboxylase  52.55 
 
 
503 aa  488  1e-136  Mycobacterium sp. KMS  Bacteria  normal  normal  0.173098 
 
 
-
 
NC_008146  Mmcs_2679  propionyl-CoA carboxylase  52.55 
 
 
503 aa  488  1e-136  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1271  propionyl-CoA carboxylase  45.71 
 
 
600 aa  486  1e-135  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0980  pyruvate carboxylase  47.08 
 
 
1147 aa  383  1e-104  Geobacillus sp. WCH70  Bacteria  normal  0.125957  n/a   
 
 
-
 
NC_013411  GYMC61_1852  pyruvate carboxylase  47.3 
 
 
1147 aa  381  1e-104  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B1190  pyruvate carboxylase  45.71 
 
 
1148 aa  376  1e-102  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4050  pyruvate carboxylase  45.65 
 
 
1148 aa  375  1e-102  Bacillus cereus B4264  Bacteria  normal  0.898796  n/a   
 
 
-
 
NC_003909  BCE_3994  pyruvate carboxylase  45.43 
 
 
1148 aa  371  1e-101  Bacillus cereus ATCC 10987  Bacteria  normal  0.882525  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3773  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-101  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.333  n/a   
 
 
-
 
NC_005945  BAS3859  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-101  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3690  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-101  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3707  pyruvate carboxylase  45.22 
 
 
1148 aa  371  1e-101  Bacillus cereus E33L  Bacteria  normal  0.863258  n/a   
 
 
-
 
NC_007530  GBAA_4157  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-101  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.820084  n/a   
 
 
-
 
NC_011773  BCAH820_3962  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-101  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009487  SaurJH9_1174  pyruvate carboxylase  43.93 
 
 
1150 aa  369  1e-100  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.810456  n/a   
 
 
-
 
NC_009632  SaurJH1_1196  pyruvate carboxylase  43.93 
 
 
1150 aa  369  1e-100  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4065  pyruvate carboxylase  45.22 
 
 
1148 aa  370  1e-100  Bacillus cereus AH187  Bacteria  normal  0.0164116  n/a   
 
 
-
 
NC_009674  Bcer98_2649  pyruvate carboxylase  45.24 
 
 
1148 aa  367  1e-100  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00733169  n/a   
 
 
-
 
NC_004578  PSPTO_5381  biotin carboxylase/biotin carboxyl carrier protein  40.96 
 
 
579 aa  365  2e-99  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_00681  acetyl-CoA carboxylase biotin carboxylase subunit  44.05 
 
 
448 aa  365  2e-99  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP0704  pyruvate carboxylase  44.4 
 
 
1147 aa  364  6e-99  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_00721  acetyl-CoA carboxylase biotin carboxylase subunit  43.17 
 
 
449 aa  364  6e-99  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.249054  n/a   
 
 
-
 
NC_009091  P9301_00711  acetyl-CoA carboxylase biotin carboxylase subunit  43.17 
 
 
449 aa  364  6e-99  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0062  acetyl-CoA carboxylase biotin carboxylase subunit  43.17 
 
 
448 aa  362  3e-98  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0696  pyruvate carboxylase  45.38 
 
 
1137 aa  362  3e-98  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_00691  acetyl-CoA carboxylase biotin carboxylase subunit  43.17 
 
 
449 aa  360  7e-98  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.36167  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1043  Carbamoyl-phosphate synthase L chain ATP-binding  42.35 
 
 
476 aa  359  1.9999999999999998e-97  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_03221  acetyl-CoA carboxylase biotin carboxylase subunit  44.57 
 
 
448 aa  359  1.9999999999999998e-97  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_011689  PHATRDRAFT_49339  precursor of carboxylase pyruvate carboxylase  45.7 
 
 
1264 aa  355  2e-96  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_0421  acetyl-CoA carboxylase biotin carboxylase subunit  43.14 
 
 
448 aa  355  2.9999999999999997e-96  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4148  acetyl-CoA carboxylase, biotin carboxylase  43.67 
 
 
448 aa  352  2e-95  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.339218 
 
 
-
 
NC_007516  Syncc9605_2259  acetyl-CoA carboxylase biotin carboxylase subunit  43.57 
 
 
448 aa  352  3e-95  Synechococcus sp. CC9605  Bacteria  normal  0.571536  normal  0.652272 
 
 
-
 
NC_013235  Namu_4233  Carbamoyl-phosphate synthase L chain ATP- binding  40.89 
 
 
594 aa  352  3e-95  Nakamurella multipartita DSM 44233  Bacteria  normal  0.213527  normal  0.607428 
 
 
-
 
NC_013730  Slin_5245  acetyl-CoA carboxylase, biotin carboxylase  43.17 
 
 
447 aa  351  4e-95  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2028  acetyl-CoA carboxylase, biotin carboxylase  46.5 
 
 
446 aa  350  6e-95  Meiothermus silvanus DSM 9946  Bacteria  normal  0.256761  normal 
 
 
-
 
NC_007604  Synpcc7942_1379  acetyl-CoA carboxylase biotin carboxylase subunit  43.13 
 
 
453 aa  350  1e-94  Synechococcus elongatus PCC 7942  Bacteria  normal  0.34087  normal 
 
 
-
 
NC_008819  NATL1_01241  acetyl-CoA carboxylase biotin carboxylase subunit  42.45 
 
 
447 aa  348  2e-94  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.114391  normal 
 
 
-
 
NC_009338  Mflv_4784  carbamoyl-phosphate synthase L chain, ATP-binding  38.56 
 
 
599 aa  349  2e-94  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.324654  normal 
 
 
-
 
NC_007335  PMN2A_1423  acetyl-CoA carboxylase biotin carboxylase subunit  41.94 
 
 
447 aa  348  3e-94  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0290  acetyl-CoA carboxylase, biotin carboxylase  42.64 
 
 
448 aa  348  4e-94  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.0124015 
 
 
-
 
NC_009952  Dshi_2485  pyruvate carboxylase  44.35 
 
 
1145 aa  347  7e-94  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_1183  acetyl-CoA carboxylase, biotin carboxylase  42.61 
 
 
455 aa  346  1e-93  Elusimicrobium minutum Pei191  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0036  acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase  48.35 
 
 
463 aa  346  1e-93  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  42.89 
 
 
448 aa  345  2e-93  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_011726  PCC8801_1426  acetyl-CoA carboxylase biotin carboxylase subunit  42.11 
 
 
449 aa  346  2e-93  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0516  acetyl-CoA carboxylase biotin carboxylase subunit  43.36 
 
 
447 aa  346  2e-93  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0701369  normal 
 
 
-
 
NC_013757  Gobs_4367  Carbamoyl-phosphate synthase L chain ATP- binding protein  39.6 
 
 
584 aa  346  2e-93  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.830439  n/a   
 
 
-
 
NC_013161  Cyan8802_1455  acetyl-CoA carboxylase biotin carboxylase subunit  42.11 
 
 
449 aa  346  2e-93  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0051  acetyl-CoA carboxylase biotin carboxylase  42.23 
 
 
448 aa  345  2.9999999999999997e-93  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0779  acetyl-CoA carboxylase, biotin carboxylase  42.77 
 
 
475 aa  345  4e-93  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2022  acetyl-CoA carboxylase, biotin carboxylase  43.82 
 
 
446 aa  345  4e-93  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0711095  n/a   
 
 
-
 
NC_013525  Tter_1619  Carbamoyl-phosphate synthase L chain ATP- binding protein  41.58 
 
 
581 aa  343  8e-93  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_4207  acetyl-CoA carboxylase, biotin carboxylase  38.41 
 
 
588 aa  343  9e-93  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5845  biotin carboxylase  40.54 
 
 
578 aa  342  2e-92  Agrobacterium vitis S4  Bacteria  normal  0.249832  n/a   
 
 
-
 
NC_008347  Mmar10_1142  pyruvate carboxylase  44.19 
 
 
1146 aa  342  2e-92  Maricaulis maris MCS10  Bacteria  normal  0.0248368  normal  0.044238 
 
 
-
 
NC_009720  Xaut_3502  acetyl-CoA carboxylase, biotin carboxylase  45.34 
 
 
452 aa  342  2.9999999999999998e-92  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.365763 
 
 
-
 
NC_011661  Dtur_1039  acetyl-CoA carboxylase, biotin carboxylase  43.64 
 
 
447 aa  342  2.9999999999999998e-92  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6500  Carbamoyl-phosphate synthase L chain ATP- binding  39.24 
 
 
589 aa  342  4e-92  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.450636  normal  0.501395 
 
 
-
 
NC_008687  Pden_4144  pyruvate carboxylase  44.85 
 
 
1144 aa  341  4e-92  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.407783 
 
 
-
 
NC_013946  Mrub_1544  acetyl-CoA carboxylase biotin carboxylase  43.13 
 
 
447 aa  341  4e-92  Meiothermus ruber DSM 1279  Bacteria  normal  0.111795  hitchhiker  0.00898283 
 
 
-
 
NC_009952  Dshi_1395  acetyl-CoA carboxylase biotin carboxylase subunit  44.44 
 
 
448 aa  341  5e-92  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.150284  normal 
 
 
-
 
NC_007493  RSP_2090  pyruvate carboxylase  45 
 
 
1154 aa  341  5.9999999999999996e-92  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0765  pyruvate carboxylase  45 
 
 
1154 aa  340  5.9999999999999996e-92  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.531635  normal 
 
 
-
 
NC_010511  M446_5425  acetyl-CoA carboxylase, biotin carboxylase  45.35 
 
 
451 aa  340  9e-92  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.943443 
 
 
-
 
NC_007575  Suden_0622  biotin carboxylase-like  40.12 
 
 
485 aa  340  9.999999999999999e-92  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1480  acetyl-CoA carboxylase biotin carboxylase subunit  42.21 
 
 
448 aa  339  1.9999999999999998e-91  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.841777 
 
 
-
 
NC_008044  TM1040_2028  pyruvate carboxylase  43.74 
 
 
1146 aa  339  1.9999999999999998e-91  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0809  Carbamoyl-phosphate synthase L chain ATP- binding  39.36 
 
 
587 aa  338  2.9999999999999997e-91  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2677  acetyl-CoA carboxylase, biotin carboxylase  42.86 
 
 
447 aa  338  2.9999999999999997e-91  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.229585  n/a   
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  42.92 
 
 
446 aa  338  2.9999999999999997e-91  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  42.58 
 
 
446 aa  338  3.9999999999999995e-91  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_009428  Rsph17025_0677  pyruvate carboxylase  44.35 
 
 
1154 aa  338  3.9999999999999995e-91  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00418471 
 
 
-
 
NC_007514  Cag_0359  Acetyl-CoA carboxylase, biotin carboxylase  42.17 
 
 
447 aa  338  5e-91  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.476375  n/a   
 
 
-
 
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