| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2867 |
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| Symbol | |
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| ID | 4922246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3400606 |
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| End bp | 3403890 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164464 |
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| Product | pyruvate carboxylase, propionyl-CoA carboxylase |
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| Protein accession | YP_001094992 |
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| Protein GI | 127513795 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
[COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGTG TTTTTAATCG GATCCTGATT GCCAATCGGG GTGAAATCGC TATCCGTATC
GCACAGACCT GTGCCGATAT GGGCATCGAC AGCCTGGCAA TCTACGCCGA AGACGACAGT
CAGTCGCTAC ATACCAAGAA GGCTGATCAG GCGGTGGCCC TCAAGGGCCG CGGCGTCAAG
GCGTACCTGG ATATCGAGCA GCTGATTGCC GTGGCCAAGG CCCATGGGTG TGATGCCGTG
CACCCCGGCT ATGGCTTTCT GTCTGAAAAC AGCAGCTTCT CAAAGCGCTG TCACGAGGAA
GGGATCTGCT TCATCGGCTC ATCGGCCGAA TTGCTTGACT TGCTGGGCAA CAAGGCTACC
GCCCGGGAAA CCGCCCTGCG CTCAGACACG CCGCTCACCG GCGGCATCAA CAAGCCCTGC
AGCCTGGAAG AGGTGCAAGC CTTCTTTACC AGCCTGGGTG ATGGCGCCGC CGTGATGATC
AAGGCCCTGG CCGGCGGTGG CGGGCGCGGC ATGCGTCCCG TCAGCCGCTA TGAGGATCTG
GCCGAGGCCT ATCGTCAATG CCGCGAGGAG GCGATCATCG CCTTTGGCAG CGGCGAGCTG
TATGTGGAGC AACTGGTGCA ACATGCCCGT CATATCGAGG TGCAGATCTT GGGCGACGGC
ACGGGCGCCG CGGTGCATGC CTGGGAGCGC GAGTGCACCC TGCAGCGCCG TAATCAGAAG
CTGCTGGAGA TCGCCCCCAG CCCGAGCCTT GACGACGCGA CGCGCATGCC AATCATCGAG
TCGGCATTGC AGCTGGCCAG CGACGTGAAA TACCAGGGCC TTGGCACCTT CGAGTTCCTG
CTGGATGCAG ACGATCACAG CAAGTTCTAC TTCATGGAGA TCAACCCACG GATCCAGGTG
GAGCACACCA TCACCGAAGA GATCACCGGC CTGAACCTGG TCAAGTTACA GATATTGCTC
GGAGCCGGTA AGACGCTGGC AGAGCTGTCA CTGACTGAAG CGCCGATCAA ACGCGGCTGC
GCCATTCAGG CGCGCATCAA TCTGGAGCAG ATGCTGCCCG ATGGCAGCAC CAAGCCTGCC
TCTGGGGTGA TCAAGGCCTA CCAGGTGCCT AACGGCCATA ACGTGCGCGT GGATGACTAC
CTGTACGCAG GTTACAAGGT CAGCCCCAGC TACGACTCAT TGGGCGCCAA GATCATCGCC
AAGGGCGAAG ACTTCAGCGC GGCGCTGAAC AAGGTCTACC TCAGCCTCAA GGCGCTGAAT
ATCGACGGGG TGCAGAGCAA CAAGGCCCTA CTGATGAACC TGCTGCAGCG TGAAGAGGTG
CAGCACAACC GCCTCAGCAC CCGCTTCGTC GAGGCGCACA TGGCCGAGCT GTTGGCCGAT
GACGACCACC ACGAGCACTT CTTCAACATC GCCAGCGACC AGCAAGAGAC GGTGCAGGCG
GTAAATATTC CCGCCGGCTG TGAGGGGGTC AAGTCTCCCA CCGCAGGCGT ACTGGTGCAG
GTCAACATCG AATCTGGCGA CGAGGTGTTC GCTGGCCAGG AGATCGCCGT CATCGAGGCG
ATGAAGATGG AGATCCCGGT AAAATCTGAA CACGCAGGTA TCGTCACCGA GGTGCTAACC
GGCAATATCG GCGAGGTGAT AGACGAGCAT CAGATCCTGG CGGTGATTCA GCCGGGCGAG
GTCTCAGTCA CCGGCGGTCA GACCGAGATG GAGATCGATC TCGATTATAT TCGCGCCAAC
TTAGCCGAGT TCTTCGACCG CCGCGACAAG ACACTGGATG AGAGCCGCAG CGAGGCGGTG
GCCAAGCGTC ATAGCGAGGG CAAGCGCACC GCCCGGGAAA ACCTTAACGA TCTCCTCGAC
GAAGGCAGCT TTAACGAATA CGGCCAGCTG GCCATCGCCG CCCAGCGGCA GAAGCATGCC
ATCGACAAGT TGGTGGAGAT CAGCCCGGCC GACGGCAAGA TCACCGGCAT AGGCACGGTC
AACGCCGATA GCTTCGGCGA GGAAGCCGCA CGCTGCGCCG TGATGTCCTA CGACTACACT
GTCATGGCGG GCTCACAGGG CCTGGTCAAC CATAAGAAGA CCGACCGCCT GCTGGAACTC
TGTAAGAAGT GGAAACTGCC ACTGGTGATA TTCGCCGAGG GGGCCGGTGG GCGCCCCTCG
GATACCGACT ACCCTGGTGT GGCCTTCCTG AACCTGCACA CTTTCTCCTC CCTGGGCGAG
TTGTCAGGTT TGGTGCCCAC CGTGGGTATC GCCGCCGGTA ACTGTTTTGC CGGTAACGCG
GCCCTCTACG GCGTGTGTGA CCTCACCATC GCCACCCGTC AGGCCAGCAT TGGCATGGCG
GGGCCGGCGA TGATCGAAGG CGGTGGCCTA GGCGTCTTCA AACCCGAAGA GGTGGGGCCG
CCGTCGGTAC TCAGTCCTAA CGGGGTGATC GACATCCTGG TTGAGGATGA GGCCGAGGCG
GTTGCGGTCA CCAAGAAGTA CCTCTCCTAC TTCCAAGGGG ATCTGAGCGA ATGGCAAGTG
GCGGATCAGC GCAGATTGCG CCATCTGATC CCCGAGAACC GCATGGCCAT CTATGACATT
CGTGAAGTGA TCGACACCCT GTGTGACAAG GACTCGGTAT TGGAGCTAAG GCGCGAGTTT
GCCAAGAATA TGATCACCGC CATGGTGCGT ATCGAGGGCA AGGCCTACGG CCTGTACGCC
AACGACCCAC GCTTCCTCGG CGGCGCCATA GATGCCGATG CCGGCGACAA ACTGGCCCGC
TTTATTCAGC TGTGTGACGC CCATGATATT CCTATGATCT CCCTGTGCGA CACCCCGGGC
TTCATGGTGG GCCCTGAGTC GGAAAAACGC GCCACTGTCC GCCATATCTC CCGCCTCTTC
GTCCACGGCG CCAACAGCAC TGTACCTCTG TTCGCCCTGG TGCTGCGTAA GGGCTACGGC
CTGGGTGTCA TGGGGATGAC GGGTGGCGGC TTCACCGCAC CTGTGTTTAC CGCCTCCTGG
CCAAGTGGCG AGTTTGGTGC CATGGGCATA GAGGGTGCTG TGCGTATCGC GGCCAAGCGA
CAGCTGGAGG CGATAGCCGA TCCAGATGAG CGCGAGGCCA CCTTTAAGGC CATGGTCGAT
AAGCTCTACA GCCACGGCAG CGCCATCAAT ACCGCCAGCT ATCTGGAGCT GGATGCGGTG
ATCGACCCCA TGGAGTCCCG CGACTGGATC GTTCGCGGTC TGGCCTGCCT GCCAAAACCC
GAGAAGCGCA GCGGCAAGAA ACGTAACTGT ATCGATACCT GGTAA
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| Protein sequence | MTRVFNRILI ANRGEIAIRI AQTCADMGID SLAIYAEDDS QSLHTKKADQ AVALKGRGVK
AYLDIEQLIA VAKAHGCDAV HPGYGFLSEN SSFSKRCHEE GICFIGSSAE LLDLLGNKAT
ARETALRSDT PLTGGINKPC SLEEVQAFFT SLGDGAAVMI KALAGGGGRG MRPVSRYEDL
AEAYRQCREE AIIAFGSGEL YVEQLVQHAR HIEVQILGDG TGAAVHAWER ECTLQRRNQK
LLEIAPSPSL DDATRMPIIE SALQLASDVK YQGLGTFEFL LDADDHSKFY FMEINPRIQV
EHTITEEITG LNLVKLQILL GAGKTLAELS LTEAPIKRGC AIQARINLEQ MLPDGSTKPA
SGVIKAYQVP NGHNVRVDDY LYAGYKVSPS YDSLGAKIIA KGEDFSAALN KVYLSLKALN
IDGVQSNKAL LMNLLQREEV QHNRLSTRFV EAHMAELLAD DDHHEHFFNI ASDQQETVQA
VNIPAGCEGV KSPTAGVLVQ VNIESGDEVF AGQEIAVIEA MKMEIPVKSE HAGIVTEVLT
GNIGEVIDEH QILAVIQPGE VSVTGGQTEM EIDLDYIRAN LAEFFDRRDK TLDESRSEAV
AKRHSEGKRT ARENLNDLLD EGSFNEYGQL AIAAQRQKHA IDKLVEISPA DGKITGIGTV
NADSFGEEAA RCAVMSYDYT VMAGSQGLVN HKKTDRLLEL CKKWKLPLVI FAEGAGGRPS
DTDYPGVAFL NLHTFSSLGE LSGLVPTVGI AAGNCFAGNA ALYGVCDLTI ATRQASIGMA
GPAMIEGGGL GVFKPEEVGP PSVLSPNGVI DILVEDEAEA VAVTKKYLSY FQGDLSEWQV
ADQRRLRHLI PENRMAIYDI REVIDTLCDK DSVLELRREF AKNMITAMVR IEGKAYGLYA
NDPRFLGGAI DADAGDKLAR FIQLCDAHDI PMISLCDTPG FMVGPESEKR ATVRHISRLF
VHGANSTVPL FALVLRKGYG LGVMGMTGGG FTAPVFTASW PSGEFGAMGI EGAVRIAAKR
QLEAIADPDE REATFKAMVD KLYSHGSAIN TASYLELDAV IDPMESRDWI VRGLACLPKP
EKRSGKKRNC IDTW
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