Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2485 |
Symbol | |
ID | 5713381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2637777 |
End bp | 2641214 |
Gene Length | 3438 bp |
Protein Length | 1145 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641268408 |
Product | pyruvate carboxylase |
Protein accession | YP_001533820 |
Protein GI | 159045026 |
COG category | [C] Energy production and conversion |
COG ID | [COG1038] Pyruvate carboxylase |
TIGRFAM ID | [TIGR01235] pyruvate carboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGATT TTCAGAAGAT CCTGATTGCC AATCGCGGCG AGATCGCCAT CCGGGTGATG CGCGCGGCCA ACGAACTGGG CAAGAAAACG GTCGCGGTCT ATGCCGAGGA AGACAAGCTC TGCCTGCACC GGTTCAAGGC AGACGAGGCC TACAAGATCG GCGAGGGGCT CGGCCCGGTC GCGGCCTACC TGTCGATCGA CGAGATCATC CGCGTGGCGA AGCTCTCGGG CGCGGACGCA ATCCATCCGG GCTACGGCCT GCTGTCCGAG AACCCGGATT TCGTGGATGC TTGCGTCGCC AACGGCATCG CCTTCATCGG GCCCAGGGCC GAAACCATGC GCGCGCTCGG CGACAAGGCC TCCGCGCGCC GGGTGGCGAT CGAGGCAGGC GTGCCGGTGA TCCCCGCCAC CGAGGTGCTG GGCGACGACA TGGACAAGGT CCGCGCCGAG GCCGAGGCGA TCGGCTTTCC GCTGATGCTC AAGGCGTCCT GGGGCGGCGG CGGGCGCGGG ATGCGCCCGA TCTTCGACCC CGACGAGGTG GCCGATAAGG TGCGCGAGGG CCGGCGCGAA GCCGAAGCCG CCTTCGGCAA TGGCGAGGGC TATCTGGAAA AGATGATCAC CCGCGCGCGG CATGTCGAGG TGCAGATCCT CGGCGACAGC ATGGGCAACA TCTATCACCT GTGGGAACGG GACTGCTCGG TTCAGCGCCG CAACCAGAAG GTCGTCGAAC GCGCCCCCGC GCCTTACCTG TCGTCCTCGC AACGCGAGCA GCTGTGCGAA CTGGGCCGCA AGATCTGCGC CCATGTGAAT TACGAATGCG CCGGCACCGT CGAGTTCCTG ATGGACATGG ATACCGGCGA GTTCTTCTTC ATCGAGGTGA ACCCCCGCGT GCAGGTCGAG CATACCGTGA CCGAGGAAGT CACCGGCATC GACATCGTTC GCGCCCAGAT CCTGATCGCC GAGGGCAAAT CCCTGGTCGA GGCCACCGGC ATGGCCAGCC AGTACGACGT GCAACTCAAC GGCCACGCGA TCCAGTGCCG GATCACCACC GAAGACCCGC AGAACAACTT CATCCCCGAC TATGGCCGGA TCACCGCCTA TCGCGGGGCG ACCGGCATGG GCATCCGGCT CGACGGCGGC ACCGCCTATT CCGGCGCGGT GATCACACGC TACTATGACA GCCTGCTGGA AAAGGTCACC GCCTGGGCCC CCACGCCCGA GGCGGCCATC GCCCGGATGG ACCGCGCCCT GCGCGAATTC CGCATCCGGG GTGTCAGCAC CAACATCGCC TTCGTCGAGA ACCTGCTGAA GCACCCGACC TTCCTCAACA ACCAGTATAC CACCAAGTTC ATCGACGAGA CCGAGGAGCT GTTCCAGTTC CCCAAGCGCC GCGACCGGGC GACCCGCATC CTGCGCTACA TCGCGGATAT CTCCGTCAAC GGACATCCCG AGACCGAAGG CCGCCCCAAG CCGCCCGCCA CGCCGCGCGC GCTCAGGGCC CCCGCGCCGA AGGCCGCGCC CGCCCCCGGC ACCCGGACCC TGCTGGAGAA AAAAGGCCCG CAGGCGGTGG CCGACTGGAT GGCAGCGCAG AAACAACTGC TGATCACCGA CACCACCATG CGTGACGGGC ACCAGTCCCT GCTGGCCACG CGGATGCGGT CCATCGACAT GATCCGGGTG GCGCCGAGTT ACGCCGCGAA CCTGCCGCAG CTCTTCTCGG TCGAATGCTG GGGCGGCGCG ACTTTCGACG TGGCCTACCG GTTCTTGCAG GAATGCCCCT GGCAACGGCT CCGCGACATC CGCGCGGCGA TGCCCAACGT GATGACCCAG ATGCTGCTGC GCGGCTCGAA CGGCGTGGGC TATACCAACT ACCCCGACAA CGTGGTGCGC GCCTTCACCC TGCAGGCCGC CGAGAGCGGC GTCGACGTCT TCCGCGTCTT CGACAGCCTG AACTGGGTCG AGAACATGCG CGTCGCCATG GACGCGGTGC TGGAATCGGG CAAGGTCTGC GAGGGCGCGA TCTGCTACAC CGGCGACATC CTCGACCCGA ACCGGGCGAA ATACGACCTG AACTACTACG TCACCATGGG CAAGGAGCTG CGCGAGGCTG GCGCCCATAT CCTGGGGCTG AAGGACATGG CGGGGCTGCT GAAACCCGCC TCCGCCCGGA TCCTGATCAA GGCCCTGAAG GAAGAGGTCG GCCTGCCCAT CCACTTCCAC ACCCATGACA CCGCCGGTAT CGCCAGCGCC ACGATCCTGG CCGCCGCCGA GAGCGGCGTG GACGCGGTCG ATTGCGCCAT GGACGCGCTG TCGGGCAACA CCTCCCAGGC GACGCTCGGC ACGGTGGTCG AGGCGCTGCA ACACACCGAC CGCGACACCG GGCTCGACAT CAAGGCGGTG CGCGAGATCT CCGACTACTG GGAAGCCGTC CGCGGCGAAT ACGCGGCCTT CGAGAGCGGC ATGCAGGCCC CCTCCTCCGA GGTCTACCTG CACGAGATGC CCGGCGGACA GTTCACCAAC CTCAAGGCCC AGGCCCGCTC GCTCGGGCTT GAGGAACGCT GGCACGAGGT CGCCCAGACC TATGCGGATG TGAACCAGAT GTTCGGCGAC ATCGTGAAGG TCACGCCGTC GTCGAAGGTG GTGGGCGACA TGGCACTGAT GATGGTCAGC CAGGGCCTGA GCCGCGCGGA TGTGGAGGAC CCCGACCGCG ACGTGTCCTT CCCGGATTCG GTGATCGACA TGATGCGCGG CAATCTCGGC CAGCCTGCGG GCGGGTTTCC CGAAGCGATC GTCGCCAAGA TCCTCAAGGG CGAGTCCCCC AATACCGAGC GCCCGGGCAA GCATATCCCG CCCGTCGATC TCGAGAAGAC CCGGGCCGAT CTCGCCGCGC AGCTGGAGGT GGATATCGAC GACGAGGACC TCAACGGTTA TCTGATGTAT CCCAAGGTCT TCACCGATTA CATGACCCGC CATGCCGAAT ACGGCCCCGT GCGCACCCTG CCCACGCGGA CGTTTTTCTA CGGCATGCAG CCCGGCGACG AGATCGAGGT CGAGATCGAC CCGGGCAAGA CCCTGGTGGT GCGGATGCAG ACCGCGTCCG AGACCAACGA GGATGGCGAG GTCAAGGTGT TCTTCGAGTT GAACGGCCAG CCCCGGCAAG TCCGCGTCCC CAACCGCAAG GCCGCCGCGT CCGTGGCGAA ACGGCCCAAG GCCGAGCTGG GCAACCCCAA CCATGTGGGC GCGCCGATGC CCGGTGTGGT GGCCTCGGTC GCGGTGCAGG CGGGGGCCTC GGTCAAGGAG GGCGATCTGC TGCTGACCAT CGAGGCGATG AAGATGGAAA CCGGCATCCA TGCGGAGCGC GACGCGGTGG TCAAGGCCGT CCACGTCACC CCCGCCGCCC AGATCGACGC CAAGGACCTG TTGGTGGAGC TGGAGTGA
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Protein sequence | MTDFQKILIA NRGEIAIRVM RAANELGKKT VAVYAEEDKL CLHRFKADEA YKIGEGLGPV AAYLSIDEII RVAKLSGADA IHPGYGLLSE NPDFVDACVA NGIAFIGPRA ETMRALGDKA SARRVAIEAG VPVIPATEVL GDDMDKVRAE AEAIGFPLML KASWGGGGRG MRPIFDPDEV ADKVREGRRE AEAAFGNGEG YLEKMITRAR HVEVQILGDS MGNIYHLWER DCSVQRRNQK VVERAPAPYL SSSQREQLCE LGRKICAHVN YECAGTVEFL MDMDTGEFFF IEVNPRVQVE HTVTEEVTGI DIVRAQILIA EGKSLVEATG MASQYDVQLN GHAIQCRITT EDPQNNFIPD YGRITAYRGA TGMGIRLDGG TAYSGAVITR YYDSLLEKVT AWAPTPEAAI ARMDRALREF RIRGVSTNIA FVENLLKHPT FLNNQYTTKF IDETEELFQF PKRRDRATRI LRYIADISVN GHPETEGRPK PPATPRALRA PAPKAAPAPG TRTLLEKKGP QAVADWMAAQ KQLLITDTTM RDGHQSLLAT RMRSIDMIRV APSYAANLPQ LFSVECWGGA TFDVAYRFLQ ECPWQRLRDI RAAMPNVMTQ MLLRGSNGVG YTNYPDNVVR AFTLQAAESG VDVFRVFDSL NWVENMRVAM DAVLESGKVC EGAICYTGDI LDPNRAKYDL NYYVTMGKEL REAGAHILGL KDMAGLLKPA SARILIKALK EEVGLPIHFH THDTAGIASA TILAAAESGV DAVDCAMDAL SGNTSQATLG TVVEALQHTD RDTGLDIKAV REISDYWEAV RGEYAAFESG MQAPSSEVYL HEMPGGQFTN LKAQARSLGL EERWHEVAQT YADVNQMFGD IVKVTPSSKV VGDMALMMVS QGLSRADVED PDRDVSFPDS VIDMMRGNLG QPAGGFPEAI VAKILKGESP NTERPGKHIP PVDLEKTRAD LAAQLEVDID DEDLNGYLMY PKVFTDYMTR HAEYGPVRTL PTRTFFYGMQ PGDEIEVEID PGKTLVVRMQ TASETNEDGE VKVFFELNGQ PRQVRVPNRK AAASVAKRPK AELGNPNHVG APMPGVVASV AVQAGASVKE GDLLLTIEAM KMETGIHAER DAVVKAVHVT PAAQIDAKDL LVELE
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