Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3842 |
Symbol | |
ID | 5106072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4230034 |
End bp | 4233306 |
Gene Length | 3273 bp |
Protein Length | 1090 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640505096 |
Product | pyruvate carboxylase., propionyl-CoA carboxylase |
Protein accession | YP_001189321 |
Protein GI | 146308856 |
COG category | [C] Energy production and conversion [I] Lipid transport and metabolism |
COG ID | [COG1038] Pyruvate carboxylase [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit [COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.735507 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTTTT CCGCCCTGCT GATCGCCAAC CGCGGCGAGA TCGCCATCCG CATCGCCCAT GCCTGCGCCG ACCTCGGTAT CCGCAGCGTG GCGGTGTACG CCGAGGACGA CAGCGCCTGC CTGCACACGC GCAAGGCCGA CCTGGCCGTC GCGCTGGCTG GACGCGGCCC GGCGGCCTAT CTGGATATGG ATCAACTCAT TGCCATCGCC CACGAGCAGG GCTGTGCGGC CATCCATCCC GGCTACGGTT TTCTCGCCGA GAACGCCGAG TTCGCCCGCC GCTGCCAGGC CGCCGGGCTG ACCTTCGTCG GCCCGACGCC GGAAACCCTG CAACTGTTCG GCGACAAGGC CGCCGCCCGC GCCCTGGCCG AACGCTGCGC AGTGCCGCTG GTACCGGGTC TCAACCAGTC GGTGACGCTG GAGCAGGCCA CCGCCTTTCT CGCCGAGCAC GGCAGCGTGA TGCTCAAGGC CCTGGCCGGC GGCGGCGGGC GCGGCATGCG TGCAGTGGAG GATGCGGCGC AACTGGCCGA GGCCTTCGCC CGCTGCGCCT CCGAGGCCCA GGGCGCCTTC GGCAGCGGCG CACTGTACGT GGAAAAGCGC GTGCGCCGCG CCCGGCATAT CGAAGTGCAG GTGCTCGGCG ACGGCAGCGG CGCGGTCAGT CACCTGTGGG AGCGCGACTG CAGCCTGCAG CGCCGTCACC AGAAGCTGGT GGAGATCGCC CCCAGCCCCG ATCTTGACGC CGCCACCCGC GACGCGATCA TCGCCAACGC CATGCGCCTG GCCGCCGAGG TGCAGTATCG CGGCATCGGC ACCTTCGAAT TCCTGCTCGA CCTCGACCAG CCCGGGCGCT TCTACTTCAT GGAGGCCAAC CCGCGCGTGC AGGTGGAGCA CACCGTCACC GAGCAGGTCA CCGGCGTCGA TCTGCTGCAC ACGCAACTGC AACTGGCCGC CGGCAGCAGC CTGGCCGAGC TGAATCTGCT CAACCCGCCC GCGCCAAAGG GCTACGCCGT ACAGCTGCGT CTGAATCTGG AAACCCTGCT CGCCGATGGC ACGGCGCGCC CGGCCAGCGG CGTGCTCGGC GCCTACCAGC CGCCCAGCGG CCCAGGCCTG CGTGTGGATG GCTGCGGCTA TGCCGGTTAT GCCGTGAGCC CGGCCTACGA TTCGCTGATC GCCAAGCTGA TCGCCAGCGC CAGCGACTAC CCCGGCGCTC TGCGCCGCGC CTACCGGGCA CTGTGCGAGT TCCGCCTCGA AGGCGTGGCG AGCAACCTGC ACCTGCTGCA GAACCTGCTG CAGCGCGACG AGGTGATCGC CAATCAGGTC GACACCAGCT ATGTCGAGCG TCACCTGGGC GAGCTGCTGG CCCCTTGCGA GCAGGCCCAC CCGCACCGTT ACTTCGCCAG CGACACATCT GCGCAAAGCG CCAGAGCCAG CCTCGACGCC CCGCCCGGCA CCCTGGCGCT GAATGCGCCC AGCGCTGGCG TGCTGGTCAG CCTGGCGGTG GCCGAGGGCG ACGCCGTGGC CACCGGTCAG CGCATCGCCG TGCTGGAGGC GATGAAGATG GAATTCGAGG TCAAGGCCGA GCACAGCGGC ATCGTCCGTG CACTGGCCGT GGCACCCGGT GAGGCCGTCG GCGAGGGCCA GGCGCTGGCG TATCTGGAAC CGGCCGAAGT GGATGGTCTG GACAGTCATG GCGAGCAGGC GGTCGACCTG GCGCATATCC GCGCCGACCT GGCCGAAGTG CTCGAACGCC ACGCACGCCT GACCGACGAG TGCCGTCCCG AAGCTGTGGC GAAAAGGCGC AAGACCGGCC AACGCACGGT TCGGGAGAAT CTGCAGGATC TGCTCGATGA CGGCAGCTTT ATCGAATACG GCGCCATGGC CCTGGCCGCC CAGCGCCGTC GCCGTTCGCC CGAGGAACTG CTGGAGCTGA GCCCGGCCGA CGGTCTGGTC GCCGGTATCG GCACGGTGAA CGCCGCGCGC TTCGGCAGCG AGGCCGCGCG CTGCATGGCC GTCGCCTACG ACTACACGGT ATTCGCCGGC ACCCAGGGGG TGATGAACCA CAAGAAGACC GACCGCATGC TGGCCCTGGC CGAGCAGTGG CGCCTGCCGG TGGTGCTGTT CGCCGAAGGC GGTGGCGGCC GCCCGGGGGA TACCGACTTC GTTGGCGTGG CCGGGCTGGA CTGCCACACC TTCGTCGCCA TGGCCAAACT CTCCGGCCTG GTACCGACGG TGGGCGTGGT CTCCGGCCGC TGCTTCGCCG GCAACGCGGC GCTGCTCGGC TGCTGCGACG TGATCATCGC CACCCGCAAT GCCAGCATCG GTATGGCCGG CCCGGCGATG ATCGAAGGCG GCGGCCTGGG CAGTTTCACC CCCGAGCAGG TCGGCCCGAC CAGCGTGCAG GGCCCCAACG GCGTGATTGA CGTGCTGGTG GAGGACGAAG CCGCGGCGGT CGCCGTGGCC AAGCAGTACC TGAGCTATTT CCAGGGCCCG GTGAACGACT GGCAGTGCAG CGATCCGCGC GAGCTGCGCC AGGTGATCCC GGAAAACCGC CTGCGCGTGT ACGACATCCG CCAGGTGATC GAACTGCTGG CAGACGACGG CAGCGTGCTG GAGCTGCGCC GCCAGTTCGC CCCCGGTCTG ATCACCGCGC TGATCCGCAT CGAGGGCAAG TCCTTCGGCC TGATCGCCAA CAACCCCGCG CACCTGGGTG GCGCCATCGA TGCCGTGGCC GGCGACAAGG CCGCGCGCTT TCTGCAACTG TGCGAGGCCC ATGACCTGCC CATCGTCTCG CTGTGCGACA CCCCCGGCTT CATGGTCGGC CCGGAAGCGG AGAAACAGGC CACGGTGCGC CACGTCTCGC GCCTGTTCGT CACCGCCGCC AGCCTCACGG TGCCCTTCTT CACCCTGGTG CTGCGCAAGG GCTACGGCCT CGGCGCCCAG GCCATGGCCG CCGGCAGCTT CCATTCGCCG CTGTTCACCG CCGCCTGGCC CAGTGGCGAA TTCGGCGCCA TGGGCCTCGA AGGCGCGGTG CGCCTGGGTT TTGCCAAGGA GCTGGCAGCT CAGCCGGACG AGGCCGCGCG TCAGGCCCTG TTCGACAAGC TGGTGACCAA GGCCTACGAC AACGGCAAAG CGCTGAACAT GGCCAGCTAT CTGGAGATCG ACGCCGTGAT CGACCCGGCC GATAGCCGCG CCTGGCTGCT ACGCGGGCTC AATGCGGCGC CGCGCCCGCC GCGGCGCGAC GGCAAGAAAC GGCCCTTTAT CGACACCTGG TAA
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Protein sequence | MPFSALLIAN RGEIAIRIAH ACADLGIRSV AVYAEDDSAC LHTRKADLAV ALAGRGPAAY LDMDQLIAIA HEQGCAAIHP GYGFLAENAE FARRCQAAGL TFVGPTPETL QLFGDKAAAR ALAERCAVPL VPGLNQSVTL EQATAFLAEH GSVMLKALAG GGGRGMRAVE DAAQLAEAFA RCASEAQGAF GSGALYVEKR VRRARHIEVQ VLGDGSGAVS HLWERDCSLQ RRHQKLVEIA PSPDLDAATR DAIIANAMRL AAEVQYRGIG TFEFLLDLDQ PGRFYFMEAN PRVQVEHTVT EQVTGVDLLH TQLQLAAGSS LAELNLLNPP APKGYAVQLR LNLETLLADG TARPASGVLG AYQPPSGPGL RVDGCGYAGY AVSPAYDSLI AKLIASASDY PGALRRAYRA LCEFRLEGVA SNLHLLQNLL QRDEVIANQV DTSYVERHLG ELLAPCEQAH PHRYFASDTS AQSARASLDA PPGTLALNAP SAGVLVSLAV AEGDAVATGQ RIAVLEAMKM EFEVKAEHSG IVRALAVAPG EAVGEGQALA YLEPAEVDGL DSHGEQAVDL AHIRADLAEV LERHARLTDE CRPEAVAKRR KTGQRTVREN LQDLLDDGSF IEYGAMALAA QRRRRSPEEL LELSPADGLV AGIGTVNAAR FGSEAARCMA VAYDYTVFAG TQGVMNHKKT DRMLALAEQW RLPVVLFAEG GGGRPGDTDF VGVAGLDCHT FVAMAKLSGL VPTVGVVSGR CFAGNAALLG CCDVIIATRN ASIGMAGPAM IEGGGLGSFT PEQVGPTSVQ GPNGVIDVLV EDEAAAVAVA KQYLSYFQGP VNDWQCSDPR ELRQVIPENR LRVYDIRQVI ELLADDGSVL ELRRQFAPGL ITALIRIEGK SFGLIANNPA HLGGAIDAVA GDKAARFLQL CEAHDLPIVS LCDTPGFMVG PEAEKQATVR HVSRLFVTAA SLTVPFFTLV LRKGYGLGAQ AMAAGSFHSP LFTAAWPSGE FGAMGLEGAV RLGFAKELAA QPDEAARQAL FDKLVTKAYD NGKALNMASY LEIDAVIDPA DSRAWLLRGL NAAPRPPRRD GKKRPFIDTW
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