More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4069 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_1073  carbamoyl-phosphate synthase L chain ATP-binding  61.75 
 
 
1097 aa  1253    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.398596 
 
 
-
 
NC_008786  Veis_1682  carbamoyl-phosphate synthase L chain, ATP-binding  61.63 
 
 
1097 aa  1242    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2997  pyruvate carboxylase., propionyl-CoA carboxylase  55.15 
 
 
1112 aa  1098    Ralstonia eutropha JMP134  Bacteria  normal  0.717985  n/a   
 
 
-
 
NC_007348  Reut_B3892  pyruvate carboxylase., propionyl-CoA carboxylase  71.86 
 
 
1105 aa  1544    Ralstonia eutropha JMP134  Bacteria  normal  0.222877  n/a   
 
 
-
 
NC_009719  Plav_2692  carbamoyl-phosphate synthase L chain ATP-binding  55.94 
 
 
1091 aa  1172    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.246578  normal 
 
 
-
 
NC_009439  Pmen_3842  pyruvate carboxylase., propionyl-CoA carboxylase  55.94 
 
 
1090 aa  1115    Pseudomonas mendocina ymp  Bacteria  normal  0.735507  normal 
 
 
-
 
NC_012856  Rpic12D_2019  Carbamoyl-phosphate synthase L chain ATP-binding  57.59 
 
 
1103 aa  1131    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4792  Carbamoyl-phosphate synthase L chain ATP-binding  62.69 
 
 
1098 aa  1307    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0228  pyruvate carboxylase  55.42 
 
 
1102 aa  1105    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1636  Carbamoyl-phosphate synthase L chain ATP-binding  55.67 
 
 
1103 aa  1118    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3899  propionyl-CoA carboxylase  64.05 
 
 
610 aa  781    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1872  Carbamoyl-phosphate synthase L chain ATP- binding protein  52.02 
 
 
1054 aa  927    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0325  putative carbamoyl-phosphate synthase/carboxyltransferase  47.74 
 
 
1033 aa  911    Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00413632  normal  0.277217 
 
 
-
 
NC_007958  RPD_0602  carbamoyl-phosphate synthase L chain, ATP-binding  55.78 
 
 
1102 aa  1122    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4464  pyruvate carboxylase., methylmalonyl-CoA carboxytransferase  55.35 
 
 
1067 aa  1036    Caulobacter sp. K31  Bacteria  normal  0.0495259  normal 
 
 
-
 
NC_007974  Rmet_4069  acetyl-CoA carboxylase (biotin carboxylase and carboxyl transferase domains) / biotin carboxyl carrier protein  100 
 
 
1126 aa  2236    Cupriavidus metallidurans CH34  Bacteria  normal  0.0299228  normal 
 
 
-
 
NC_007974  Rmet_4971  putative carbamoyl-phosphate synthase L chain, ATP-binding  71.8 
 
 
1152 aa  1511    Cupriavidus metallidurans CH34  Bacteria  normal  0.266349  normal  0.508617 
 
 
-
 
NC_009092  Shew_2867  pyruvate carboxylase, propionyl-CoA carboxylase  48.92 
 
 
1094 aa  1029    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3940  biotin carboxylase  54.67 
 
 
1095 aa  1047    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_46320  putative pyruvate carboxylase  54.06 
 
 
1095 aa  1019    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.948302  normal  0.0234216 
 
 
-
 
NC_009943  Dole_1889  propionyl-CoA carboxylase  59.92 
 
 
519 aa  640    Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2413  Carbamoyl-phosphate synthase L chain ATP-binding  57.32 
 
 
1103 aa  1155    Ralstonia pickettii 12J  Bacteria  normal  0.370889  normal 
 
 
-
 
NC_013510  Tcur_1862  carboxyl transferase  58.46 
 
 
602 aa  614  9.999999999999999e-175  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00333639  n/a   
 
 
-
 
NC_013739  Cwoe_2712  carboxyl transferase  55.49 
 
 
524 aa  530  1e-149  Conexibacter woesei DSM 14684  Bacteria  normal  0.0757047  normal  0.0196449 
 
 
-
 
NC_008726  Mvan_0066  propionyl-CoA carboxylase  55.87 
 
 
519 aa  521  1e-146  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.229003 
 
 
-
 
NC_009338  Mflv_0781  propionyl-CoA carboxylase  55.64 
 
 
518 aa  516  1.0000000000000001e-145  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.576525  normal 
 
 
-
 
NC_009077  Mjls_2710  propionyl-CoA carboxylase  55.23 
 
 
503 aa  516  1e-144  Mycobacterium sp. JLS  Bacteria  normal  0.595961  normal  0.61988 
 
 
-
 
NC_008146  Mmcs_2679  propionyl-CoA carboxylase  55.03 
 
 
503 aa  514  1e-144  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2724  propionyl-CoA carboxylase  55.03 
 
 
503 aa  514  1e-144  Mycobacterium sp. KMS  Bacteria  normal  normal  0.173098 
 
 
-
 
NC_008228  Patl_1271  propionyl-CoA carboxylase  46.68 
 
 
600 aa  493  9.999999999999999e-139  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5381  biotin carboxylase/biotin carboxyl carrier protein  42.66 
 
 
579 aa  387  1e-106  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_00721  acetyl-CoA carboxylase biotin carboxylase subunit  43.75 
 
 
449 aa  377  1e-103  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.249054  n/a   
 
 
-
 
NC_009976  P9211_00681  acetyl-CoA carboxylase biotin carboxylase subunit  45.61 
 
 
448 aa  376  1e-102  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0062  acetyl-CoA carboxylase biotin carboxylase subunit  43.32 
 
 
448 aa  371  1e-101  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_00711  acetyl-CoA carboxylase biotin carboxylase subunit  43.32 
 
 
449 aa  373  1e-101  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1664  carbamoyl-phosphate synthase L chain, ATP-binding  39.74 
 
 
600 aa  367  1e-100  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_2259  acetyl-CoA carboxylase biotin carboxylase subunit  45.67 
 
 
448 aa  368  1e-100  Synechococcus sp. CC9605  Bacteria  normal  0.571536  normal  0.652272 
 
 
-
 
NC_010730  SYO3AOP1_1043  Carbamoyl-phosphate synthase L chain ATP-binding  42.34 
 
 
476 aa  369  1e-100  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1289  carbamoyl-phosphate synthase L chain, ATP-binding protein  39.11 
 
 
602 aa  366  2e-99  Mycobacterium sp. MCS  Bacteria  normal  0.252747  n/a   
 
 
-
 
NC_009077  Mjls_1325  carbamoyl-phosphate synthase L chain, ATP-binding  39.11 
 
 
602 aa  366  2e-99  Mycobacterium sp. JLS  Bacteria  normal  0.727992  normal 
 
 
-
 
NC_008705  Mkms_1306  carbamoyl-phosphate synthase L chain, ATP-binding  39.11 
 
 
602 aa  366  2e-99  Mycobacterium sp. KMS  Bacteria  normal  0.0707012  normal  0.142834 
 
 
-
 
NC_007513  Syncc9902_0421  acetyl-CoA carboxylase biotin carboxylase subunit  44.59 
 
 
448 aa  365  3e-99  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0980  pyruvate carboxylase  44.37 
 
 
1147 aa  362  2e-98  Geobacillus sp. WCH70  Bacteria  normal  0.125957  n/a   
 
 
-
 
NC_008817  P9515_00691  acetyl-CoA carboxylase biotin carboxylase subunit  42.76 
 
 
449 aa  362  2e-98  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.36167  n/a   
 
 
-
 
NC_007335  PMN2A_1423  acetyl-CoA carboxylase biotin carboxylase subunit  44.32 
 
 
447 aa  362  2e-98  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2451  carbamoyl-phosphate synthase subunit L  42.38 
 
 
576 aa  362  2e-98  Ralstonia eutropha JMP134  Bacteria  normal  0.0140517  n/a   
 
 
-
 
NC_009338  Mflv_4784  carbamoyl-phosphate synthase L chain, ATP-binding  39.47 
 
 
599 aa  362  2e-98  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.324654  normal 
 
 
-
 
NC_014212  Mesil_2028  acetyl-CoA carboxylase, biotin carboxylase  47.65 
 
 
446 aa  362  2e-98  Meiothermus silvanus DSM 9946  Bacteria  normal  0.256761  normal 
 
 
-
 
NC_009674  Bcer98_2649  pyruvate carboxylase  42.74 
 
 
1148 aa  361  4e-98  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00733169  n/a   
 
 
-
 
NC_008819  NATL1_01241  acetyl-CoA carboxylase biotin carboxylase subunit  44.66 
 
 
447 aa  360  9e-98  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.114391  normal 
 
 
-
 
NC_013161  Cyan8802_1455  acetyl-CoA carboxylase biotin carboxylase subunit  43.88 
 
 
449 aa  360  9.999999999999999e-98  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1426  acetyl-CoA carboxylase biotin carboxylase subunit  43.88 
 
 
449 aa  359  1.9999999999999998e-97  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_006274  BCZK3707  pyruvate carboxylase  42.53 
 
 
1148 aa  359  1.9999999999999998e-97  Bacillus cereus E33L  Bacteria  normal  0.863258  n/a   
 
 
-
 
NC_011772  BCG9842_B1190  pyruvate carboxylase  42.74 
 
 
1148 aa  358  2.9999999999999997e-97  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_3690  pyruvate carboxylase  42.53 
 
 
1148 aa  358  2.9999999999999997e-97  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3859  pyruvate carboxylase  42.53 
 
 
1148 aa  358  3.9999999999999996e-97  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4367  Carbamoyl-phosphate synthase L chain ATP- binding protein  40.17 
 
 
584 aa  358  3.9999999999999996e-97  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.830439  n/a   
 
 
-
 
NC_007530  GBAA_4157  pyruvate carboxylase  42.53 
 
 
1148 aa  358  3.9999999999999996e-97  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.820084  n/a   
 
 
-
 
NC_011773  BCAH820_3962  pyruvate carboxylase  42.53 
 
 
1148 aa  358  3.9999999999999996e-97  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_3994  pyruvate carboxylase  42.53 
 
 
1148 aa  357  5.999999999999999e-97  Bacillus cereus ATCC 10987  Bacteria  normal  0.882525  n/a   
 
 
-
 
NC_011059  Paes_0290  acetyl-CoA carboxylase, biotin carboxylase  43.86 
 
 
448 aa  357  5.999999999999999e-97  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.0124015 
 
 
-
 
NC_010644  Emin_1183  acetyl-CoA carboxylase, biotin carboxylase  42.55 
 
 
455 aa  357  7.999999999999999e-97  Elusimicrobium minutum Pei191  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1379  acetyl-CoA carboxylase biotin carboxylase subunit  43.41 
 
 
453 aa  356  1e-96  Synechococcus elongatus PCC 7942  Bacteria  normal  0.34087  normal 
 
 
-
 
NC_008820  P9303_03221  acetyl-CoA carboxylase biotin carboxylase subunit  44.66 
 
 
448 aa  357  1e-96  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A4050  pyruvate carboxylase  42.53 
 
 
1148 aa  357  1e-96  Bacillus cereus B4264  Bacteria  normal  0.898796  n/a   
 
 
-
 
NC_008527  LACR_0696  pyruvate carboxylase  45.54 
 
 
1137 aa  355  2e-96  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4233  Carbamoyl-phosphate synthase L chain ATP- binding  40.5 
 
 
594 aa  355  2.9999999999999997e-96  Nakamurella multipartita DSM 44233  Bacteria  normal  0.213527  normal  0.607428 
 
 
-
 
NC_007575  Suden_0622  biotin carboxylase-like  39.17 
 
 
485 aa  355  2.9999999999999997e-96  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1852  pyruvate carboxylase  43.86 
 
 
1147 aa  355  2.9999999999999997e-96  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A4065  pyruvate carboxylase  42.53 
 
 
1148 aa  355  2.9999999999999997e-96  Bacillus cereus AH187  Bacteria  normal  0.0164116  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3773  pyruvate carboxylase  42.11 
 
 
1148 aa  353  1e-95  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.333  n/a   
 
 
-
 
NC_014158  Tpau_1031  Carbamoyl-phosphate synthase L chain ATP- binding protein  38.99 
 
 
602 aa  352  2e-95  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1196  pyruvate carboxylase  42.74 
 
 
1150 aa  352  2e-95  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1174  pyruvate carboxylase  42.74 
 
 
1150 aa  352  2e-95  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.810456  n/a   
 
 
-
 
NC_007413  Ava_0516  acetyl-CoA carboxylase biotin carboxylase subunit  44.87 
 
 
447 aa  352  3e-95  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0701369  normal 
 
 
-
 
NC_008609  Ppro_2022  acetyl-CoA carboxylase, biotin carboxylase  42.45 
 
 
446 aa  352  3e-95  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0711095  n/a   
 
 
-
 
NC_007005  Psyr_0500  carbamoyl-phosphate synthase subunit L  41.43 
 
 
577 aa  351  4e-95  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.193791  normal 
 
 
-
 
NC_011988  Avi_5845  biotin carboxylase  41.33 
 
 
578 aa  351  4e-95  Agrobacterium vitis S4  Bacteria  normal  0.249832  n/a   
 
 
-
 
NC_014248  Aazo_0051  acetyl-CoA carboxylase biotin carboxylase  43.52 
 
 
448 aa  351  5e-95  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5726  carbamoyl-phosphate synthase L chain ATP-binding  41.65 
 
 
575 aa  351  5e-95  Delftia acidovorans SPH-1  Bacteria  normal  0.267998  normal  0.835782 
 
 
-
 
NC_002976  SERP0704  pyruvate carboxylase  42.46 
 
 
1147 aa  350  9e-95  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  42.92 
 
 
446 aa  349  2e-94  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_011884  Cyan7425_1480  acetyl-CoA carboxylase biotin carboxylase subunit  43.86 
 
 
448 aa  348  2e-94  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.841777 
 
 
-
 
NC_013037  Dfer_4148  acetyl-CoA carboxylase, biotin carboxylase  43.42 
 
 
448 aa  349  2e-94  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.339218 
 
 
-
 
NC_013730  Slin_5245  acetyl-CoA carboxylase, biotin carboxylase  42.54 
 
 
447 aa  348  3e-94  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  42.67 
 
 
446 aa  347  5e-94  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  42.45 
 
 
446 aa  347  6e-94  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_008752  Aave_3510  carbamoyl-phosphate synthase L chain, ATP-binding  43.3 
 
 
583 aa  347  8.999999999999999e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  0.866354  normal  0.682914 
 
 
-
 
NC_013441  Gbro_1832  Carbamoyl-phosphate synthase L chain ATP- binding protein  39.12 
 
 
601 aa  347  1e-93  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0792  carbamoyl-phosphate synthase L chain ATP-binding  40.66 
 
 
583 aa  346  1e-93  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00727726 
 
 
-
 
NC_012880  Dd703_3292  Carbamoyl-phosphate synthase L chain ATP-binding  40.98 
 
 
577 aa  345  2e-93  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0868  carbamoyl-phosphate synthase L chain, ATP-binding  40.66 
 
 
577 aa  345  2e-93  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0809  Carbamoyl-phosphate synthase L chain ATP- binding  40.17 
 
 
587 aa  345  2.9999999999999997e-93  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2557  putative acyl-CoA carboxylase, alpha subunit  40.91 
 
 
587 aa  345  2.9999999999999997e-93  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0466  acetyl-CoA carboxylase, biotin carboxylase  45.89 
 
 
445 aa  345  2.9999999999999997e-93  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0174688  normal 
 
 
-
 
NC_009921  Franean1_5916  carbamoyl-phosphate synthase L chain ATP-binding  39.52 
 
 
587 aa  345  4e-93  Frankia sp. EAN1pec  Bacteria  normal  normal  0.574289 
 
 
-
 
NC_013159  Svir_05850  acetyl/propionyl-CoA carboxylase, alpha subunit  38.83 
 
 
591 aa  345  4e-93  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.79631 
 
 
-
 
NC_013172  Bfae_21160  acetyl/propionyl-CoA carboxylase, alpha subunit  39.17 
 
 
592 aa  344  5e-93  Brachybacterium faecium DSM 4810  Bacteria  normal  0.127791  n/a   
 
 
-
 
NC_007514  Cag_0359  Acetyl-CoA carboxylase, biotin carboxylase  41.92 
 
 
447 aa  344  5.999999999999999e-93  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.476375  n/a   
 
 
-
 
NC_013169  Ksed_08190  acetyl/propionyl-CoA carboxylase, alpha subunit  40.07 
 
 
593 aa  343  7e-93  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.253328  normal  0.580973 
 
 
-
 
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