| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0868 |
|---|
| Symbol | |
|---|
| ID | 3963779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 904970 |
|---|
| End bp | 906703 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637915696 |
|---|
| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
|---|
| Protein accession | YP_522147 |
|---|
| Protein GI | 89899676 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TACTGATTGC CAACCGGGGC GAAATTGCCG TCCGCATTAC CCGCGCCTGC
GCCGACTACG GCGTGGCATC CGTGGCCGTG TATGCCAACG CCGACCTCAA CGCCCTGCAT
ACACGTATGG CCGACGAGGC CTATGGCCTC GATGGCGACC GCCCCTTTGA GACCTACCTG
AACATCGAGA AGCTGCTGGC CGTGGCCGTT CGCAGCGGTG CCGACGCCGT GCATCCCGGT
TACGGTTTTC TGTCCGAAAG CGCCGCGTTT GCCCAGGCGG TGATCGACGC CGGCCTGCTC
TGGATCGGCC CGTCGCCCGC CGCCATTGCG CGTCTGGGTG ACAAGGTGCA AGCGCGCAAG
ATCGCCCTGA AGGTGGGCGC CCCGCTGGTG GCCGGCATGA CCGAACCGGC CAAAGATGCC
AGCGAAGTGC TGGCCTTTGC CGAGCAATAT GGCCTGCCGA TCATCATCAA GGCGGCGTTT
GGTGGCGGCG GTCGCGGCAT GAAAATCGCG TGGCGCCTGG ACGAGGTGGC CGAGCTGTAT
GAATCCGCCG TGCGCGAGGC CATCACGGCG TTCGGGCGCG GCGAGTGTTT TGTGGAACAG
TTTCTGGACT GCCCGCGCCA CATCGAGGCC CAGGTGCTGG CCGACACCCA CGGCCACGTG
GTCGTGCTGG GCACACGCGA CTGCTCGCTG CAGCGGCGCA ACCAAAAACT GGTGGAAGAA
GCGCCCGCGC CGTTCCTGAG CGACGCGCAG CGCAGCCGCA TCCACCAGGC GGCGCACGAC
ATCTGCGCCG AAGCGGGCTA CACCAGCGCG GGCACAGTCG AGTTCCTGCT CAGTGGCAAT
GGCGCCATCT CCTTCCTGGA AGTCAACACC CGCCTGCAGG TCGAGCACAC GGTCACCGAA
CAGACCACCG GCATTGACCT GGTGGTCGAG CAGCTGCGCA TCGCCGATGG CCACACGCTG
ACCATCACCC AGACCCCAGA GCCCCAAGGC CACGCCTTTG AGTTCCGCAT CAACGCCGAG
GACGTGGGGC GTGGCTTTCT ACCGTCGCCG GGTCTGGTCA CGGCCTTTGC GCCGCCCTCG
GGGCCAGGCG TGCGTGTGGA CGCCGGGGTG GAATCGCTGT CCACGGTGCC GGGCACGTTC
GACTCGCTGA TGGCCAAGCT CATCGTCACG GGCGCCACCC GCCAGCAGGC CATCGCGCGC
GCGCGCCGGG CTTTGAGAGA GTTCCGCATT GAAGGTGTCG CCTCAGTGCT GCCGTTTCAT
CGGGCGGTCA TGGCGCACCC GGATTTCGTG TCCGAAGAAC CGTTCAGGGT GCACACGCGC
TGGATTGAAA CCGACTTTGC CAACACCCTG GCCGCCGCCG CGCGCGCCGA ACCGGCGCCC
GATGCCAGCC TCTACCGTAC CGCCATGGAA ATCGACGGCC GTCGCGTCGC CCTCGGCCTG
CCCGCCGAAC TGCTGCGCGG CCTGCAATCA CTGGGCGGCG GCGCCAATAT GGCCGCAACC
AGCCCGGCCG CAGCCGCTAA AGATGTCGGC GCAGTGATCT CGCCCATCTC CGGCACCTTG
CAGTCCTGGA CCGTAGCCGA TGGCAGTGAG GTCCAACAGG GCGACGTGGT TGCTGTCATG
GATGCCATGA AAATGGAGAT GCACGTTTCC GCCCACCGCA GCGGGCGTAT TACGCTAAAT
GCTCCGGAAG GCAGTTACCA AATTCTCGAG GCTGTTCTGG CCAGCATTGA ATAA
|
|---|
| Protein sequence | MKKVLIANRG EIAVRITRAC ADYGVASVAV YANADLNALH TRMADEAYGL DGDRPFETYL
NIEKLLAVAV RSGADAVHPG YGFLSESAAF AQAVIDAGLL WIGPSPAAIA RLGDKVQARK
IALKVGAPLV AGMTEPAKDA SEVLAFAEQY GLPIIIKAAF GGGGRGMKIA WRLDEVAELY
ESAVREAITA FGRGECFVEQ FLDCPRHIEA QVLADTHGHV VVLGTRDCSL QRRNQKLVEE
APAPFLSDAQ RSRIHQAAHD ICAEAGYTSA GTVEFLLSGN GAISFLEVNT RLQVEHTVTE
QTTGIDLVVE QLRIADGHTL TITQTPEPQG HAFEFRINAE DVGRGFLPSP GLVTAFAPPS
GPGVRVDAGV ESLSTVPGTF DSLMAKLIVT GATRQQAIAR ARRALREFRI EGVASVLPFH
RAVMAHPDFV SEEPFRVHTR WIETDFANTL AAAARAEPAP DASLYRTAME IDGRRVALGL
PAELLRGLQS LGGGANMAAT SPAAAAKDVG AVISPISGTL QSWTVADGSE VQQGDVVAVM
DAMKMEMHVS AHRSGRITLN APEGSYQILE AVLASIE
|
|---|
| |