More than 300 homologs were found in PanDaTox collection
for query gene Daci_1073 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_4792  Carbamoyl-phosphate synthase L chain ATP-binding  70.08 
 
 
1098 aa  1439    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2867  pyruvate carboxylase, propionyl-CoA carboxylase  50.45 
 
 
1094 aa  1080    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1872  Carbamoyl-phosphate synthase L chain ATP- binding protein  52.12 
 
 
1054 aa  915    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2997  pyruvate carboxylase., propionyl-CoA carboxylase  56.88 
 
 
1112 aa  1124    Ralstonia eutropha JMP134  Bacteria  normal  0.717985  n/a   
 
 
-
 
NC_007348  Reut_B3892  pyruvate carboxylase., propionyl-CoA carboxylase  60.52 
 
 
1105 aa  1256    Ralstonia eutropha JMP134  Bacteria  normal  0.222877  n/a   
 
 
-
 
NC_008786  Veis_1682  carbamoyl-phosphate synthase L chain, ATP-binding  74.16 
 
 
1097 aa  1509    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3940  biotin carboxylase  56.36 
 
 
1095 aa  1099    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1862  carboxyl transferase  61.39 
 
 
602 aa  652    Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00333639  n/a   
 
 
-
 
NC_007778  RPB_0228  pyruvate carboxylase  53.51 
 
 
1102 aa  1095    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4464  pyruvate carboxylase., methylmalonyl-CoA carboxytransferase  55.55 
 
 
1067 aa  1030    Caulobacter sp. K31  Bacteria  normal  0.0495259  normal 
 
 
-
 
NC_007908  Rfer_3899  propionyl-CoA carboxylase  71.5 
 
 
610 aa  849    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1636  Carbamoyl-phosphate synthase L chain ATP-binding  54.12 
 
 
1103 aa  1104    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2413  Carbamoyl-phosphate synthase L chain ATP-binding  57.63 
 
 
1103 aa  1176    Ralstonia pickettii 12J  Bacteria  normal  0.370889  normal 
 
 
-
 
NC_007953  Bxe_C0325  putative carbamoyl-phosphate synthase/carboxyltransferase  45.12 
 
 
1033 aa  859    Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00413632  normal  0.277217 
 
 
-
 
NC_007958  RPD_0602  carbamoyl-phosphate synthase L chain, ATP-binding  53.62 
 
 
1102 aa  1107    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2019  Carbamoyl-phosphate synthase L chain ATP-binding  57.81 
 
 
1103 aa  1144    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2692  carbamoyl-phosphate synthase L chain ATP-binding  56.7 
 
 
1091 aa  1192    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.246578  normal 
 
 
-
 
NC_007974  Rmet_4069  acetyl-CoA carboxylase (biotin carboxylase and carboxyl transferase domains) / biotin carboxyl carrier protein  61.8 
 
 
1126 aa  1272    Cupriavidus metallidurans CH34  Bacteria  normal  0.0299228  normal 
 
 
-
 
NC_007974  Rmet_4971  putative carbamoyl-phosphate synthase L chain, ATP-binding  60.99 
 
 
1152 aa  1258    Cupriavidus metallidurans CH34  Bacteria  normal  0.266349  normal  0.508617 
 
 
-
 
NC_009439  Pmen_3842  pyruvate carboxylase., propionyl-CoA carboxylase  57.35 
 
 
1090 aa  1152    Pseudomonas mendocina ymp  Bacteria  normal  0.735507  normal 
 
 
-
 
NC_008463  PA14_46320  putative pyruvate carboxylase  56.6 
 
 
1095 aa  1088    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.948302  normal  0.0234216 
 
 
-
 
NC_010002  Daci_1073  carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
1097 aa  2188    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.398596 
 
 
-
 
NC_009943  Dole_1889  propionyl-CoA carboxylase  57.42 
 
 
519 aa  620  1e-176  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2712  carboxyl transferase  54.58 
 
 
524 aa  534  1e-150  Conexibacter woesei DSM 14684  Bacteria  normal  0.0757047  normal  0.0196449 
 
 
-
 
NC_008705  Mkms_2724  propionyl-CoA carboxylase  54.31 
 
 
503 aa  520  1e-146  Mycobacterium sp. KMS  Bacteria  normal  normal  0.173098 
 
 
-
 
NC_008146  Mmcs_2679  propionyl-CoA carboxylase  54.31 
 
 
503 aa  520  1e-146  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2710  propionyl-CoA carboxylase  54.51 
 
 
503 aa  521  1e-146  Mycobacterium sp. JLS  Bacteria  normal  0.595961  normal  0.61988 
 
 
-
 
NC_008726  Mvan_0066  propionyl-CoA carboxylase  52.38 
 
 
519 aa  514  1e-144  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.229003 
 
 
-
 
NC_009338  Mflv_0781  propionyl-CoA carboxylase  52.96 
 
 
518 aa  512  1e-143  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.576525  normal 
 
 
-
 
NC_008228  Patl_1271  propionyl-CoA carboxylase  46.64 
 
 
600 aa  501  1e-140  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1043  Carbamoyl-phosphate synthase L chain ATP-binding  41.94 
 
 
476 aa  381  1e-104  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4148  acetyl-CoA carboxylase, biotin carboxylase  45.85 
 
 
448 aa  376  1e-102  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.339218 
 
 
-
 
NC_013757  Gobs_4367  Carbamoyl-phosphate synthase L chain ATP- binding protein  39.93 
 
 
584 aa  374  1e-102  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.830439  n/a   
 
 
-
 
NC_009953  Sare_0792  carbamoyl-phosphate synthase L chain ATP-binding  41.19 
 
 
583 aa  374  1e-102  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00727726 
 
 
-
 
NC_013159  Svir_05850  acetyl/propionyl-CoA carboxylase, alpha subunit  40.87 
 
 
591 aa  373  1e-102  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.79631 
 
 
-
 
NC_009380  Strop_0849  carbamoyl-phosphate synthase L chain, ATP-binding  41.02 
 
 
583 aa  372  1e-101  Salinispora tropica CNB-440  Bacteria  normal  normal  0.650439 
 
 
-
 
NC_004578  PSPTO_5381  biotin carboxylase/biotin carboxyl carrier protein  41.58 
 
 
579 aa  368  1e-100  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0980  pyruvate carboxylase  43.87 
 
 
1147 aa  367  1e-100  Geobacillus sp. WCH70  Bacteria  normal  0.125957  n/a   
 
 
-
 
NC_008817  P9515_00691  acetyl-CoA carboxylase biotin carboxylase subunit  42.48 
 
 
449 aa  368  1e-100  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.36167  n/a   
 
 
-
 
NC_009921  Franean1_5916  carbamoyl-phosphate synthase L chain ATP-binding  40.98 
 
 
587 aa  370  1e-100  Frankia sp. EAN1pec  Bacteria  normal  normal  0.574289 
 
 
-
 
NC_008705  Mkms_1306  carbamoyl-phosphate synthase L chain, ATP-binding  39.73 
 
 
602 aa  367  1e-100  Mycobacterium sp. KMS  Bacteria  normal  0.0707012  normal  0.142834 
 
 
-
 
NC_007777  Francci3_0698  carbamoyl-phosphate synthase L chain, ATP-binding  40.85 
 
 
585 aa  367  1e-100  Frankia sp. CcI3  Bacteria  normal  normal  0.933214 
 
 
-
 
NC_009077  Mjls_1325  carbamoyl-phosphate synthase L chain, ATP-binding  39.73 
 
 
602 aa  367  1e-100  Mycobacterium sp. JLS  Bacteria  normal  0.727992  normal 
 
 
-
 
NC_008146  Mmcs_1289  carbamoyl-phosphate synthase L chain, ATP-binding protein  39.73 
 
 
602 aa  367  1e-100  Mycobacterium sp. MCS  Bacteria  normal  0.252747  n/a   
 
 
-
 
NC_013730  Slin_5245  acetyl-CoA carboxylase, biotin carboxylase  44.86 
 
 
447 aa  368  1e-100  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4233  Carbamoyl-phosphate synthase L chain ATP- binding  41.67 
 
 
594 aa  367  1e-99  Nakamurella multipartita DSM 44233  Bacteria  normal  0.213527  normal  0.607428 
 
 
-
 
NC_009091  P9301_00711  acetyl-CoA carboxylase biotin carboxylase subunit  42.7 
 
 
449 aa  365  2e-99  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5845  biotin carboxylase  41.47 
 
 
578 aa  364  4e-99  Agrobacterium vitis S4  Bacteria  normal  0.249832  n/a   
 
 
-
 
NC_007333  Tfu_2557  putative acyl-CoA carboxylase, alpha subunit  40.24 
 
 
587 aa  365  4e-99  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0062  acetyl-CoA carboxylase biotin carboxylase subunit  42.92 
 
 
448 aa  364  4e-99  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_0716  hypothetical protein  44.86 
 
 
454 aa  365  4e-99  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.404777 
 
 
-
 
NC_008816  A9601_00721  acetyl-CoA carboxylase biotin carboxylase subunit  42.48 
 
 
449 aa  364  5.0000000000000005e-99  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.249054  n/a   
 
 
-
 
NC_007005  Psyr_0500  carbamoyl-phosphate synthase subunit L  41.85 
 
 
577 aa  364  5.0000000000000005e-99  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.193791  normal 
 
 
-
 
NC_014165  Tbis_0691  carbamoyl-phosphate synthase L chain ATP- binding protein  41.33 
 
 
581 aa  364  5.0000000000000005e-99  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0174  Carbamoyl-phosphate synthase L chain ATP-binding  42.34 
 
 
591 aa  362  2e-98  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013441  Gbro_1832  Carbamoyl-phosphate synthase L chain ATP- binding protein  39.77 
 
 
601 aa  362  2e-98  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4784  carbamoyl-phosphate synthase L chain, ATP-binding  39.24 
 
 
599 aa  362  2e-98  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.324654  normal 
 
 
-
 
NC_007643  Rru_A2435  acetyl-CoA carboxylase biotin carboxylase subunit  45.53 
 
 
445 aa  361  5e-98  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.259885  n/a   
 
 
-
 
NC_007575  Suden_0622  biotin carboxylase-like  40.29 
 
 
485 aa  360  6e-98  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2715  acetyl-CoA carboxylase biotin carboxylase subunit  44.83 
 
 
448 aa  360  6e-98  Jannaschia sp. CCS1  Bacteria  normal  0.0856039  normal 
 
 
-
 
NC_013411  GYMC61_1852  pyruvate carboxylase  43.99 
 
 
1147 aa  360  6e-98  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_6396  Carbamoyl-phosphate synthase L chain ATP- binding  40.33 
 
 
588 aa  360  8e-98  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1012  Carbamoyl-phosphate synthase L chain ATP- binding protein  40.23 
 
 
600 aa  360  9e-98  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.412146  n/a   
 
 
-
 
NC_014212  Mesil_2028  acetyl-CoA carboxylase, biotin carboxylase  45.59 
 
 
446 aa  359  1.9999999999999998e-97  Meiothermus silvanus DSM 9946  Bacteria  normal  0.256761  normal 
 
 
-
 
NC_002976  SERP0704  pyruvate carboxylase  41.93 
 
 
1147 aa  358  2.9999999999999997e-97  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4207  acetyl-CoA carboxylase, biotin carboxylase  38.54 
 
 
588 aa  357  5.999999999999999e-97  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1847  Carbamoyl-phosphate synthase L chain ATP- binding protein  41.77 
 
 
481 aa  357  6.999999999999999e-97  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.252385  n/a   
 
 
-
 
NC_013205  Aaci_0766  urea carboxylase  40.98 
 
 
1201 aa  357  6.999999999999999e-97  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0782  Carbamoyl-phosphate synthase L chain ATP- binding protein  40.31 
 
 
582 aa  357  7.999999999999999e-97  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.742429  normal 
 
 
-
 
NC_010511  M446_5425  acetyl-CoA carboxylase, biotin carboxylase  45.34 
 
 
451 aa  357  8.999999999999999e-97  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.943443 
 
 
-
 
NC_005957  BT9727_3690  pyruvate carboxylase  42.15 
 
 
1148 aa  356  1e-96  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0519  pyruvate carboxylase  41.08 
 
 
1144 aa  356  1e-96  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3994  pyruvate carboxylase  41.3 
 
 
1148 aa  355  2e-96  Bacillus cereus ATCC 10987  Bacteria  normal  0.882525  n/a   
 
 
-
 
NC_011773  BCAH820_3962  pyruvate carboxylase  42.15 
 
 
1148 aa  356  2e-96  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS3859  pyruvate carboxylase  42.37 
 
 
1148 aa  355  2e-96  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3707  pyruvate carboxylase  42.15 
 
 
1148 aa  355  2e-96  Bacillus cereus E33L  Bacteria  normal  0.863258  n/a   
 
 
-
 
NC_007530  GBAA_4157  pyruvate carboxylase  42.37 
 
 
1148 aa  355  2e-96  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.820084  n/a   
 
 
-
 
NC_011894  Mnod_6042  acetyl-CoA carboxylase, biotin carboxylase  45.77 
 
 
451 aa  356  2e-96  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.650251  n/a   
 
 
-
 
NC_004310  BR0906  acetyl-CoA carboxylase biotin carboxylase subunit  45.55 
 
 
452 aa  355  2.9999999999999997e-96  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2274  acetyl-CoA carboxylase biotin carboxylase subunit  45.89 
 
 
459 aa  355  2.9999999999999997e-96  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.41756  n/a   
 
 
-
 
NC_012803  Mlut_05670  acetyl/propionyl-CoA carboxylase, alpha subunit  39.15 
 
 
618 aa  355  2.9999999999999997e-96  Micrococcus luteus NCTC 2665  Bacteria  normal  0.512556  n/a   
 
 
-
 
NC_011725  BCB4264_A4050  pyruvate carboxylase  42.15 
 
 
1148 aa  355  2.9999999999999997e-96  Bacillus cereus B4264  Bacteria  normal  0.898796  n/a   
 
 
-
 
NC_009505  BOV_0902  acetyl-CoA carboxylase biotin carboxylase subunit  45.55 
 
 
452 aa  355  2.9999999999999997e-96  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1031  Carbamoyl-phosphate synthase L chain ATP- binding protein  38.93 
 
 
602 aa  354  5e-96  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0191  acetyl-CoA carboxylase biotin carboxylase subunit  44.01 
 
 
448 aa  354  5e-96  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0809  Carbamoyl-phosphate synthase L chain ATP- binding  39.86 
 
 
587 aa  354  5e-96  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1518  acetyl-CoA carboxylase biotin carboxylase subunit  44.13 
 
 
449 aa  354  5e-96  Ruegeria sp. TM1040  Bacteria  normal  0.0122051  normal  0.737322 
 
 
-
 
NC_008541  Arth_0096  carbamoyl-phosphate synthase L chain, ATP-binding  42.02 
 
 
587 aa  354  5e-96  Arthrobacter sp. FB24  Bacteria  normal  0.800977  n/a   
 
 
-
 
NC_009674  Bcer98_2649  pyruvate carboxylase  42.58 
 
 
1148 aa  354  5e-96  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00733169  n/a   
 
 
-
 
NC_013510  Tcur_4175  Carbamoyl-phosphate synthase L chain ATP- binding protein  40.27 
 
 
584 aa  354  5e-96  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1190  pyruvate carboxylase  41.94 
 
 
1148 aa  354  5.9999999999999994e-96  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1454  acetyl-CoA carboxylase biotin carboxylase subunit  44.01 
 
 
448 aa  353  7e-96  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3773  pyruvate carboxylase  41.94 
 
 
1148 aa  353  8e-96  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.333  n/a   
 
 
-
 
NC_007516  Syncc9605_2259  acetyl-CoA carboxylase biotin carboxylase subunit  43.89 
 
 
448 aa  353  8e-96  Synechococcus sp. CC9605  Bacteria  normal  0.571536  normal  0.652272 
 
 
-
 
NC_011658  BCAH187_A4065  pyruvate carboxylase  42.15 
 
 
1148 aa  353  8e-96  Bacillus cereus AH187  Bacteria  normal  0.0164116  n/a   
 
 
-
 
NC_008541  Arth_1271  carbamoyl-phosphate synthase L chain, ATP-binding  38.89 
 
 
617 aa  353  8e-96  Arthrobacter sp. FB24  Bacteria  normal  0.333406  n/a   
 
 
-
 
NC_013162  Coch_0029  acetyl-CoA carboxylase, biotin carboxylase  43.01 
 
 
450 aa  353  8e-96  Capnocytophaga ochracea DSM 7271  Bacteria  decreased coverage  0.00270537  n/a   
 
 
-
 
NC_007604  Synpcc7942_1379  acetyl-CoA carboxylase biotin carboxylase subunit  43.45 
 
 
453 aa  353  1e-95  Synechococcus elongatus PCC 7942  Bacteria  normal  0.34087  normal 
 
 
-
 
NC_009049  Rsph17029_1824  acetyl-CoA carboxylase biotin carboxylase subunit  43.6 
 
 
448 aa  353  1e-95  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.469721 
 
 
-
 
NC_009487  SaurJH9_1174  pyruvate carboxylase  41.51 
 
 
1150 aa  352  2e-95  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.810456  n/a   
 
 
-
 
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