Gene Patl_1271 details

Gene Information

• Locus tag: Patl_1271
• ID: 4173282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1525296
• End bp: 1527098
• Gene Length: 1803 bp
• Protein Length: 600 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 638054278
• Product: propionyl-CoA carboxylase
• Protein accession: YP_660851
• Protein GI: 109897596
• COG category: [C] Energy production and conversion; [I] Lipid transport and metabolism
• COG ID: [COG1038] Pyruvate carboxylase; [COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCATT CTCATACTAT TACCGCTAGT TCTATCGCTG TTATATCTGA CATTTTTATC 
ATCCAAGGGC AAACCGTTAC TCAAGGCCAA CCTTTGTTGA CTCTACAGGT CATGGGAACG 
GTGTTGCCTG TGGTGGCTAC GCACTCAGGC GTTATCAAAC GACTGCACGT CAACATAGAG 
GATGAAGTGG TGACTAAGCA GATATTGTTA GAGATAGAGG ATGAGCCCAA CATGGTGACC 
TCAGAAGCAC AGGCAAGTGC TATGTCTAGC ACGCACAAGG CCCTGCTTGC TTTCGAAGCC 
CGCCAAACCA TGACATCGGA CGAAGCTCGA GATCAGCACA TTGCCAAGCG ACGAGCACTG 
GGTTTTAGAA GTGCCCGGCA AAATATTGAA GATCTGTGCG AAGGTGCTCA CTTTATGGAG 
TACGGCCAGT TTGCGGTAGC GGCGCAGCGT CAGCGGCGAG ACTACCAAGA ATTGAAAACT 
GCCACCGCTG CTGATGGCAT CATCACAGGT GTAGGGGAGG TCAATCGTCA AACGTTGTCA 
TTAGTGAAAG CGACAGCATG TTATAAAACG GCCCTCATCG TTAATGACTA CAGCGTGCTG 
GCAGGCACCC AAGGGTTCTT TCACCATCAA AAGCTAGATC GTATTTTGGC TGTGGCGCAA 
GAGCAGACTC TGCCTATCAT TATGTTTACC GAGGGCGGTG GCGGGCGGCC CGGCGATACT 
GATATCACCA TAGTTAATTC GGGGCTCCAG TGCGCATCAT TTTCAAGCTG GGCTGCTTTA 
AGTGGTGTCG TGCCGCGTAT TAGCGTTGCC AACGGTTATT GCTTTGCCGG CAATGCGGCA 
TTATTCGGTG CGGCTGATAT TCGAATCGCA ACCAAAAAGT CATGGATAGG AATGGCTGGC 
CCAGCCATGA TCGAAGGTGG TGGCCTAGGC GTGGTCAATG CAAAAGAAAT TGGCCCTATA 
GAAACTCAAG CTAAAAATGG TGTGGTGGAC ATAGTCGCAG AGGATGAAGC TGACGCCGCC 
TACCTAGCAA AACGCTGTTT GGGGTATTTT CAAGGCCCAA TCACATACTC AGAGAAAGAG 
CAGGCTGATA AAGACGCACA GCAAGCCAGT TTACGAGACG TACTGCCCGA TGACCGACGC 
TTTGTGTACG ATATGCGAAA AGCTATCAAT ATACTGGCTG ATAACGACAG CTTTACTGAG 
TTACAGCGTC AATTTGGGGG AGCGATTATC ACAGGATTCA TACGACTCAA GGGACGGCCC 
GTAGGTATAT TGGCGAGTGA CTGCAAGGTG CTCGGGGGAG CGATAGACGT AGAAGCAGGA 
GAGAAAGCGG CTGAATTTAT GCAATTTTGT AATGAGTTCT CAATCCCGTT GCTGAGTTTA 
TGTGATACCC CAGGTTTTAT GGTGGGGCCA GAGCATGAAG AGCGCGGGGC CGTGCGCAGA 
TTAGCCAAGT TGTTTACCTC CGGCGCTAAG CTCACTGTGC CGTTAGTGGC TGTAGCAATA 
CGCAAGTGTT ACGGCCTAGG CGCTCAAGCG TTATTGGGAG GTAGCACCAT GAAACCTCAC 
TATATGTTGT CATGGCCTAC TGGCGAATTT GGCGGAATGG GCCTAGAAGG GGCCGTTAAA 
TTGGGCTTCA GTAAAGAGCT CGCGGCGCAA GAAGACCCTA TCGCACGCCA AGCGTTATTT 
GAAAAACTCG TTGCTAAGCA ATATGCAAAT GGCCAAGCTA CAGAAGTGGC CAGTGTGCTT 
GAGATTGATG CGGTAATTGA CCCAGCTGAT ACGCGAGCAG TAATCCTGCA AACACTCTTT 
TGA 

 

Protein sequence

MSHSHTITAS SIAVISDIFI IQGQTVTQGQ PLLTLQVMGT VLPVVATHSG VIKRLHVNIE 
DEVVTKQILL EIEDEPNMVT SEAQASAMSS THKALLAFEA RQTMTSDEAR DQHIAKRRAL 
GFRSARQNIE DLCEGAHFME YGQFAVAAQR QRRDYQELKT ATAADGIITG VGEVNRQTLS 
LVKATACYKT ALIVNDYSVL AGTQGFFHHQ KLDRILAVAQ EQTLPIIMFT EGGGGRPGDT 
DITIVNSGLQ CASFSSWAAL SGVVPRISVA NGYCFAGNAA LFGAADIRIA TKKSWIGMAG 
PAMIEGGGLG VVNAKEIGPI ETQAKNGVVD IVAEDEADAA YLAKRCLGYF QGPITYSEKE 
QADKDAQQAS LRDVLPDDRR FVYDMRKAIN ILADNDSFTE LQRQFGGAII TGFIRLKGRP 
VGILASDCKV LGGAIDVEAG EKAAEFMQFC NEFSIPLLSL CDTPGFMVGP EHEERGAVRR 
LAKLFTSGAK LTVPLVAVAI RKCYGLGAQA LLGGSTMKPH YMLSWPTGEF GGMGLEGAVK 
LGFSKELAAQ EDPIARQALF EKLVAKQYAN GQATEVASVL EIDAVIDPAD TRAVILQTLF