More than 300 homologs were found in PanDaTox collection
for query gene Swit_0148 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_0148  response regulator receiver/SARP domain-containing protein  100 
 
 
119 aa  239  1e-62  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1727  response regulator receiver  38.46 
 
 
132 aa  77.8  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0248964  normal 
 
 
-
 
NC_011071  Smal_2139  two component transcriptional regulator, LuxR family  38.05 
 
 
213 aa  69.7  0.00000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1267  response regulator receiver protein  37.93 
 
 
123 aa  69.3  0.00000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0042  LuxR family DNA-binding response regulator  36.97 
 
 
212 aa  68.2  0.00000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0038  LuxR family DNA-binding response regulator  36.97 
 
 
212 aa  68.2  0.00000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2931  response regulator receiver protein  34.71 
 
 
122 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.139057  normal 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
452 aa  65.9  0.0000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2670  response regulator receiver protein  33.88 
 
 
122 aa  65.5  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.313891  normal 
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  31.67 
 
 
209 aa  65.1  0.0000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1985  PAS/PAC sensor hybrid histidine kinase  31.03 
 
 
650 aa  65.1  0.0000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3728  response regulator receiver protein  33.04 
 
 
117 aa  64.7  0.0000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2901  nitrogen regulation protein NR(I)  35.51 
 
 
468 aa  63.9  0.0000000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2519  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  35.51 
 
 
468 aa  63.9  0.0000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3429  histidine kinase  35.78 
 
 
538 aa  62.4  0.000000002  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1012  response regulator receiver protein  39.47 
 
 
120 aa  62.4  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.175734  normal  0.0400951 
 
 
-
 
NC_009675  Anae109_0442  response regulator receiver protein  38.98 
 
 
126 aa  62.8  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0489543  normal 
 
 
-
 
NC_011666  Msil_2681  response regulator receiver protein  33.9 
 
 
121 aa  61.6  0.000000003  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009783  VIBHAR_00584  response regulator  35.09 
 
 
467 aa  61.2  0.000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_001908  nitrogen regulation protein NR(I)  35.25 
 
 
467 aa  60.8  0.000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4148  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  60.5  0.000000008  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.221467 
 
 
-
 
NC_009801  EcE24377A_4390  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  60.5  0.000000008  Escherichia coli E24377A  Bacteria  normal  0.127215  n/a   
 
 
-
 
NC_011353  ECH74115_5314  nitrogen regulation protein NR(I)  37.04 
 
 
472 aa  60.5  0.000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.111299  normal  0.738695 
 
 
-
 
NC_010658  SbBS512_E4344  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  60.5  0.000000008  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4253  nitrogen regulation protein NR(I)  37.04 
 
 
472 aa  60.5  0.000000008  Escherichia coli SMS-3-5  Bacteria  normal  0.177692  normal  0.167125 
 
 
-
 
CP001509  ECD_03753  fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein  37.04 
 
 
469 aa  60.5  0.000000009  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4118  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  37.04 
 
 
469 aa  60.5  0.000000009  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2320  response regulator receiver protein  35.9 
 
 
127 aa  60.5  0.000000009  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.632565 
 
 
-
 
NC_012892  B21_03702  hypothetical protein  37.04 
 
 
469 aa  60.5  0.000000009  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4095  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  60.5  0.000000009  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2321  nitrogen regulation protein NR(I)  36.07 
 
 
468 aa  59.7  0.00000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2820  multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA  41.12 
 
 
829 aa  59.7  0.00000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  35.2 
 
 
206 aa  59.7  0.00000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_008752  Aave_3012  two component transcriptional regulator  35.9 
 
 
258 aa  59.7  0.00000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.642179 
 
 
-
 
NC_010159  YpAngola_A0027  nitrogen regulation protein NR(I)  36.11 
 
 
470 aa  58.9  0.00000002  Yersinia pestis Angola  Bacteria  normal  0.307133  normal 
 
 
-
 
NC_009512  Pput_2333  histidine kinase  33.94 
 
 
538 aa  59.3  0.00000002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1112  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  38.53 
 
 
511 aa  58.9  0.00000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4287  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  59.3  0.00000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0756679  normal 
 
 
-
 
NC_011083  SeHA_C4333  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  59.3  0.00000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.140715  normal 
 
 
-
 
NC_007778  RPB_3745  response regulator receiver domain-containing protein  29.91 
 
 
133 aa  58.9  0.00000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.368149  normal 
 
 
-
 
NC_010465  YPK_4191  nitrogen regulation protein NR(I)  36.11 
 
 
470 aa  58.9  0.00000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.500264  n/a   
 
 
-
 
NC_009524  PsycPRwf_1805  nitrogen metabolism transcriptional regulator, NtrC, Fis family  31.2 
 
 
602 aa  58.9  0.00000002  Psychrobacter sp. PRwf-1  Bacteria  normal  0.80823  normal 
 
 
-
 
NC_011205  SeD_A4394  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  59.3  0.00000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4237  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  59.3  0.00000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  32.73 
 
 
449 aa  59.3  0.00000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_22620  response regulator receiver protein  33.04 
 
 
124 aa  59.3  0.00000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0652  response regulator receiver protein  28.93 
 
 
122 aa  59.3  0.00000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.429078  normal 
 
 
-
 
NC_011094  SeSA_A4216  nitrogen regulation protein NR(I)  37.04 
 
 
469 aa  59.3  0.00000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.295301  normal 
 
 
-
 
NC_009708  YpsIP31758_0025  nitrogen regulation protein NR(I)  36.11 
 
 
470 aa  58.9  0.00000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.151443  n/a   
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  30.09 
 
 
444 aa  59.3  0.00000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_008782  Ajs_1192  nitrogen metabolism transcriptional regulator, NtrC, Fis family  38.53 
 
 
511 aa  58.9  0.00000002  Acidovorax sp. JS42  Bacteria  normal  0.616523  normal 
 
 
-
 
NC_002978  WD1216  sensor histidine kinase/response regulator  28.1 
 
 
417 aa  58.5  0.00000003  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5502  two component response regulator  34.19 
 
 
212 aa  58.2  0.00000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4144  nitrogen metabolism transcriptional regulator, NtrC, Fis family  35.14 
 
 
477 aa  58.5  0.00000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  31.62 
 
 
470 aa  58.2  0.00000004  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_007406  Nwi_0241  LuxR family transcriptional regulator  32.79 
 
 
216 aa  58.2  0.00000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0009  two component transcriptional regulator  29.63 
 
 
224 aa  58.2  0.00000004  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  35.14 
 
 
466 aa  58.2  0.00000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_007925  RPC_4677  response regulator receiver domain-containing protein  32.5 
 
 
121 aa  57.8  0.00000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3014  multi-sensor hybrid histidine kinase  28.21 
 
 
1132 aa  58.2  0.00000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.829917  hitchhiker  0.00701741 
 
 
-
 
NC_013421  Pecwa_4505  nitrogen regulation protein NR(I)  34.26 
 
 
470 aa  58.2  0.00000004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.565329  n/a   
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  35.45 
 
 
454 aa  57.8  0.00000005  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_012917  PC1_4222  nitrogen regulation protein NR(I)  34.26 
 
 
470 aa  57.8  0.00000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.327829  n/a   
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  35.04 
 
 
227 aa  57.8  0.00000005  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_007760  Adeh_3975  response regulator receiver domain-containing protein  38.89 
 
 
123 aa  57.8  0.00000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.44357  n/a   
 
 
-
 
NC_009620  Smed_4830  response regulator receiver protein  31.67 
 
 
131 aa  57.8  0.00000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.071515 
 
 
-
 
NC_008609  Ppro_3419  response regulator receiver protein  33.06 
 
 
121 aa  57.8  0.00000005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  34.26 
 
 
470 aa  57.8  0.00000005  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_009675  Anae109_3277  response regulator receiver protein  37.29 
 
 
124 aa  57.4  0.00000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  33.9 
 
 
209 aa  57.4  0.00000006  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4883  nitrogen regulation protein NR(I)  33.33 
 
 
470 aa  57.4  0.00000006  Serratia proteamaculans 568  Bacteria  normal  0.177074  hitchhiker  0.0000322182 
 
 
-
 
NC_013440  Hoch_2281  response regulator receiver protein  32.08 
 
 
128 aa  57.8  0.00000006  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.498531 
 
 
-
 
NC_011661  Dtur_0154  two component transcriptional regulator, winged helix family  33.04 
 
 
220 aa  57.4  0.00000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.443854  n/a   
 
 
-
 
NC_004578  PSPTO_0352  nitrogen regulation protein NR(I)  34.23 
 
 
478 aa  57.4  0.00000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4822  helix-turn-helix, Fis-type:nitrogen regulation protein NR(I)  34.23 
 
 
478 aa  57.4  0.00000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0059  response regulator receiver domain-containing protein  31.93 
 
 
125 aa  57.4  0.00000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.157498  normal  0.212271 
 
 
-
 
NC_007492  Pfl01_0339  nitrogen metabolism transcriptional regulator, NtrC, Fis family  35.19 
 
 
478 aa  57.4  0.00000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_4098  nitrogen regulation protein NR(I)  35.19 
 
 
470 aa  57.4  0.00000007  Enterobacter sp. 638  Bacteria  normal  normal  0.797915 
 
 
-
 
NC_002939  GSU0403  chemotaxis protein CheY  32.23 
 
 
120 aa  57  0.00000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.286627  n/a   
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  33.88 
 
 
466 aa  57  0.00000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_010571  Oter_0607  two component transcriptional regulator  34.48 
 
 
248 aa  57  0.00000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3119  response regulator receiver domain-containing protein  33.06 
 
 
120 aa  57  0.00000009  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3365  response regulator receiver protein  37.07 
 
 
142 aa  57  0.00000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.648544 
 
 
-
 
NC_008825  Mpe_A0135  two component transcriptional regulator  33.91 
 
 
251 aa  57  0.00000009  Methylibium petroleiphilum PM1  Bacteria  normal  0.134918  normal  0.276067 
 
 
-
 
NC_012912  Dd1591_4159  nitrogen regulation protein NR(I)  33.33 
 
 
470 aa  56.2  0.0000001  Dickeya zeae Ech1591  Bacteria  normal  0.086406  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  35.9 
 
 
254 aa  56.2  0.0000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  34.45 
 
 
212 aa  56.2  0.0000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  28.32 
 
 
444 aa  56.6  0.0000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  29.91 
 
 
470 aa  56.6  0.0000001  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_007760  Adeh_2635  response regulator receiver domain-containing protein  33.33 
 
 
131 aa  56.2  0.0000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0563539  n/a   
 
 
-
 
NC_011901  Tgr7_3262  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  37.62 
 
 
471 aa  56.2  0.0000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4086  response regulator receiver protein  38.89 
 
 
123 aa  56.2  0.0000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0365078  n/a   
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  31.25 
 
 
803 aa  56.2  0.0000001  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_011353  ECH74115_5603  hypothetical protein  33.33 
 
 
756 aa  56.6  0.0000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0499  response regulator receiver domain-containing protein  30.56 
 
 
473 aa  56.6  0.0000001  Saccharophagus degradans 2-40  Bacteria  normal  0.021061  normal 
 
 
-
 
NC_010002  Daci_1553  two component LuxR family transcriptional regulator  33.33 
 
 
212 aa  56.6  0.0000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3210  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  32.76 
 
 
951 aa  56.2  0.0000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6109  two component LuxR family transcriptional regulator  35.29 
 
 
210 aa  56.2  0.0000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0504113 
 
 
-
 
NC_012560  Avin_45900  nitrogen regulation protein, sigma 54-dependent response regulator NtrC (NR(I))  34.23 
 
 
478 aa  57  0.0000001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3151  nitrogen metabolism transcriptional regulator, NtrC, Fis family  35.78 
 
 
539 aa  56.2  0.0000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.845155 
 
 
-
 
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