More than 300 homologs were found in PanDaTox collection
for query gene Smon_1431 on replicon NC_013515
Organism: Streptobacillus moniliformis DSM 12112



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013515  Smon_1431  pseudouridine synthase, RluA family  100 
 
 
289 aa  585  1e-166  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_0292  pseudouridine synthase, RluA family  57.84 
 
 
283 aa  327  2.0000000000000001e-88  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00001732  n/a   
 
 
-
 
NC_008262  CPR_2089  pseudouridylate synthase family protein, yabo  38.6 
 
 
298 aa  192  6e-48  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2377  RluA family pseudouridine synthase  38.6 
 
 
298 aa  191  8e-48  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1288  RluA family pseudouridine synthase  41.35 
 
 
285 aa  172  7.999999999999999e-42  Thermoanaerobacter sp. X514  Bacteria  normal  0.543506  n/a   
 
 
-
 
NC_009253  Dred_1348  RluA family pseudouridine synthase  34.21 
 
 
303 aa  167  2e-40  Desulfotomaculum reducens MI-1  Bacteria  normal  0.628416  n/a   
 
 
-
 
NC_009253  Dred_0386  RluA family pseudouridine synthase  39.91 
 
 
303 aa  166  2.9999999999999998e-40  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1649  RluA family pseudouridine synthase  39.53 
 
 
297 aa  158  8e-38  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  32.53 
 
 
302 aa  155  6e-37  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  32.53 
 
 
302 aa  155  6e-37  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  32.53 
 
 
302 aa  155  6e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  32.53 
 
 
302 aa  155  6e-37  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  32.53 
 
 
302 aa  155  6e-37  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_009135  MmarC5_0584  RluA family pseudouridine synthase  37.21 
 
 
298 aa  155  7e-37  Methanococcus maripaludis C5  Archaea  normal  0.460121  n/a   
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  32.53 
 
 
302 aa  155  9e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  32.19 
 
 
302 aa  155  1e-36  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  32.53 
 
 
302 aa  154  2e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_011899  Hore_08290  pseudouridine synthase, RluA family  42.53 
 
 
310 aa  153  2.9999999999999998e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0252  RluA family pseudouridine synthase  35.61 
 
 
298 aa  153  2.9999999999999998e-36  Methanococcus maripaludis C7  Archaea  normal  normal  0.995369 
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  31.85 
 
 
302 aa  152  5.9999999999999996e-36  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  32.19 
 
 
302 aa  152  8e-36  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_010655  Amuc_0008  pseudouridine synthase, RluA family  31.96 
 
 
323 aa  150  2e-35  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  32.19 
 
 
302 aa  150  3e-35  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  35.86 
 
 
305 aa  148  1.0000000000000001e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0929  ribosomal large subunit pseudouridine synthase D  35.16 
 
 
303 aa  147  2.0000000000000003e-34  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1281  RluA family pseudouridine synthase  31.54 
 
 
305 aa  146  3e-34  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.71357  n/a   
 
 
-
 
NC_009487  SaurJH9_1256  RluA family pseudouridine synthase  31.54 
 
 
305 aa  146  3e-34  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0989  RluA family pseudouridine synthase  34.01 
 
 
306 aa  146  4.0000000000000006e-34  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00899774  n/a   
 
 
-
 
NC_009455  DehaBAV1_1186  ribosomal large subunit pseudouridine synthase D  33.71 
 
 
300 aa  146  4.0000000000000006e-34  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204845  n/a   
 
 
-
 
NC_011059  Paes_1440  pseudouridine synthase, RluA family  31.53 
 
 
347 aa  145  7.0000000000000006e-34  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.738263  normal 
 
 
-
 
NC_011898  Ccel_0593  pseudouridine synthase, RluA family  38.03 
 
 
299 aa  145  7.0000000000000006e-34  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000735687  n/a   
 
 
-
 
NC_013037  Dfer_2578  pseudouridine synthase, RluA family  35.32 
 
 
343 aa  145  9e-34  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.728308  normal 
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  30.93 
 
 
304 aa  144  1e-33  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_013552  DhcVS_1156  ribosomal large subunit pseudouridine synthase, RluD subfamily  34.08 
 
 
302 aa  143  3e-33  Dehalococcoides sp. VS  Bacteria  normal  0.0116106  n/a   
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  36.28 
 
 
304 aa  143  3e-33  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_009718  Fnod_1102  RluA family pseudouridine synthase  33.72 
 
 
314 aa  143  4e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  35.11 
 
 
296 aa  142  6e-33  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_009674  Bcer98_0916  RluA family pseudouridine synthase  34.75 
 
 
297 aa  142  6e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1911  pseudouridine synthase, RluA family  31.71 
 
 
356 aa  141  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.743404  normal 
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  36.32 
 
 
304 aa  140  1.9999999999999998e-32  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0878  pseudouridine synthase  36.94 
 
 
277 aa  140  3e-32  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1375  ribosomal large subunit pseudouridine synthase D  33.33 
 
 
300 aa  140  3.9999999999999997e-32  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000447138  n/a   
 
 
-
 
NC_012793  GWCH70_0777  pseudouridine synthase, RluA family  30.56 
 
 
298 aa  139  3.9999999999999997e-32  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1237  RluA family pseudouridine synthase  31.01 
 
 
334 aa  139  3.9999999999999997e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.289539  n/a   
 
 
-
 
NC_009253  Dred_3230  RluA family pseudouridine synthase  33.09 
 
 
320 aa  137  1e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1284  ribosomal large subunit pseudouridine synthase, RluA family  35.32 
 
 
292 aa  137  2e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_1813  pseudouridine synthase, RluA family  31.66 
 
 
526 aa  137  2e-31  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.000000964916  n/a   
 
 
-
 
NC_009505  BOV_1598  ribosomal large subunit pseudouridine synthase D  30.58 
 
 
334 aa  137  2e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.8835  n/a   
 
 
-
 
NC_010320  Teth514_1821  RluA family pseudouridine synthase  33.83 
 
 
305 aa  137  2e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1651  ribosomal large subunit pseudouridine synthase D  33.2 
 
 
347 aa  136  3.0000000000000003e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1324  ribosomal large subunit pseudouridine synthase D  32.49 
 
 
395 aa  136  3.0000000000000003e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0224168  n/a   
 
 
-
 
NC_013061  Phep_1219  pseudouridine synthase, RluA family  29.68 
 
 
342 aa  136  3.0000000000000003e-31  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2333  ribosomal large subunit pseudouridine synthase D  32.49 
 
 
395 aa  136  3.0000000000000003e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.93917  n/a   
 
 
-
 
NC_009076  BURPS1106A_2205  RluA family pseudouridine synthase  32.49 
 
 
395 aa  136  3.0000000000000003e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1911  pseudouridine synthase, RluA family  29.69 
 
 
304 aa  136  3.0000000000000003e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010084  Bmul_1481  RluA family pseudouridine synthase  32.35 
 
 
400 aa  136  3.0000000000000003e-31  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.00249005  normal  0.0889319 
 
 
-
 
NC_008836  BMA10229_A0083  RluA family pseudouridine synthase  32.49 
 
 
389 aa  136  4e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2168  RluA family pseudouridine synthase  32.49 
 
 
389 aa  136  4e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1084  RluA family pseudouridine synthase  32.49 
 
 
389 aa  136  4e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.346306  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1813  RluA family pseudouridine synthase  32.49 
 
 
389 aa  136  4e-31  Burkholderia mallei SAVP1  Bacteria  normal  0.587957  n/a   
 
 
-
 
NC_008062  Bcen_6286  pseudouridine synthase, RluD  29.69 
 
 
402 aa  136  4e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1793  RluA family pseudouridine synthase  29.69 
 
 
402 aa  136  4e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1704  RluA family pseudouridine synthase  32.19 
 
 
407 aa  136  5e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.225391  normal 
 
 
-
 
NC_007510  Bcep18194_A5094  ribosomal large subunit pseudouridine synthase D  32.35 
 
 
402 aa  135  5e-31  Burkholderia sp. 383  Bacteria  normal  normal  0.760184 
 
 
-
 
NC_008390  Bamb_1731  RluA family pseudouridine synthase  32.19 
 
 
405 aa  136  5e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.895388  n/a   
 
 
-
 
NC_011761  AFE_0431  ribosomal large subunit pseudouridine synthase D  33.88 
 
 
319 aa  135  6.0000000000000005e-31  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0593  pseudouridine synthase, RluA family  33.88 
 
 
310 aa  135  6.0000000000000005e-31  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.070842  normal 
 
 
-
 
NC_010002  Daci_5026  RluA family pseudouridine synthase  34.48 
 
 
356 aa  135  6.0000000000000005e-31  Delftia acidovorans SPH-1  Bacteria  normal  0.257508  normal 
 
 
-
 
NC_005945  BAS1121  pseudouridine synthetase  35.19 
 
 
297 aa  135  7.000000000000001e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1214  ribosomal large subunit pseudouridine synthase  35.19 
 
 
297 aa  135  7.000000000000001e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1044  pseudouridine synthase, RluA family  32.51 
 
 
346 aa  135  7.000000000000001e-31  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_1103  ribosomal large subunit pseudouridylate synthase D  34.76 
 
 
297 aa  135  8e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1632  pseudouridine synthase, RluA family  36.05 
 
 
304 aa  135  8e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  34.42 
 
 
296 aa  135  8e-31  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_003909  BCE_1322  ribosomal large subunit pseudouridine synthase D  34.76 
 
 
297 aa  135  9e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0458  RluA family pseudouridine synthase  30.72 
 
 
311 aa  134  9.999999999999999e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1817  RluA family pseudouridine synthase  29.35 
 
 
360 aa  134  9.999999999999999e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.294999 
 
 
-
 
NC_007651  BTH_I2253  ribosomal large subunit pseudouridine synthase D  32.07 
 
 
391 aa  135  9.999999999999999e-31  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00391915  n/a   
 
 
-
 
NC_011883  Ddes_1600  pseudouridine synthase, RluA family  32.77 
 
 
525 aa  134  9.999999999999999e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.220651  n/a   
 
 
-
 
NC_011772  BCG9842_B4086  ribosomal large subunit pseudouridine synthase, RluA family  35.62 
 
 
275 aa  134  9.999999999999999e-31  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0254  RluA family pseudouridine synthase  30.45 
 
 
316 aa  135  9.999999999999999e-31  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00128568  normal  0.0139126 
 
 
-
 
NC_008530  LGAS_1352  pseudouridylate synthase, 23S RNA-specific  34.27 
 
 
299 aa  135  9.999999999999999e-31  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000522959  normal 
 
 
-
 
NC_002976  SERP0763  ribosomal large subunit pseudouridine synthase D  34.55 
 
 
305 aa  134  1.9999999999999998e-30  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1097  pseudouridylate synthase (pseudouridine synthase)  34.33 
 
 
297 aa  134  1.9999999999999998e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0783  pseudouridine synthase, RluD  31.6 
 
 
354 aa  134  1.9999999999999998e-30  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_10900  pseudouridine synthase, RluA family  36.12 
 
 
320 aa  134  1.9999999999999998e-30  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.631494  unclonable  0.00000000285325 
 
 
-
 
NC_010483  TRQ2_0473  RluA family pseudouridine synthase  30.07 
 
 
311 aa  134  1.9999999999999998e-30  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1976  pseudouridine synthase, RluD  34.33 
 
 
318 aa  134  1.9999999999999998e-30  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  32.62 
 
 
304 aa  134  1.9999999999999998e-30  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1255  ribosomal large subunit pseudouridine synthase, RluA family  35.19 
 
 
297 aa  134  1.9999999999999998e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1360  ribosomal large subunit pseudouridine synthase, RluA family  34.33 
 
 
297 aa  133  3e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2620  RluA family pseudouridine synthase  31.11 
 
 
347 aa  133  3e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1919  pseudouridine synthase, RluA family  34.03 
 
 
370 aa  133  3e-30  Ralstonia pickettii 12J  Bacteria  normal  0.338974  normal  0.0110313 
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  34 
 
 
307 aa  133  3e-30  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1591  pseudouridine synthase, RluA family  34.03 
 
 
370 aa  132  5e-30  Ralstonia pickettii 12D  Bacteria  normal  0.150486  decreased coverage  0.00904495 
 
 
-
 
NC_011830  Dhaf_4022  pseudouridine synthase, RluA family  35.51 
 
 
334 aa  132  6e-30  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000767359  n/a   
 
 
-
 
NC_007354  Ecaj_0540  ribosomal large subunit pseudouridine synthase D  33.33 
 
 
323 aa  132  6.999999999999999e-30  Ehrlichia canis str. Jake  Bacteria  normal  0.373783  n/a   
 
 
-
 
NC_010725  Mpop_0947  pseudouridine synthase, RluA family  32.24 
 
 
345 aa  132  9e-30  Methylobacterium populi BJ001  Bacteria  normal  normal  0.48756 
 
 
-
 
NC_010184  BcerKBAB4_1110  RluA family pseudouridine synthase  35.5 
 
 
297 aa  131  1.0000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1324  pseudouridine synthase, RluA family  34.33 
 
 
328 aa  131  1.0000000000000001e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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