| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0458 |
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| Symbol | |
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| ID | 5171169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 442816 |
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| End bp | 443751 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640562962 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001244058 |
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| Protein GI | 148269598 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTTT GGAGAGTCGA AAAAAGAGAA GAGGGTTGGA GACTGGATCA GTTTTTGAAG
GAGAAGACAC CGTCATGGAT CTCGAGATCA CTGATTCAAA AAGCGATAAA AGAGGGCAAA
GTGAAGGTCA ACGGTCAGAT TAAAAAGCCG AGTTACAAGT TGAAAGAGGG TGAGATAGTA
GAGGTTGACC TCCCTGAAAA GCCACAGGAA GCGACAGTTC AACCCGAAGA GATAGAATTG
AAAGTTCTTT ATGAGGATAG AGACATCGTA GTTATCGACA AACCTGGAGA CATGATCGTT
CATCCTGTTC CCTCCAAACT CAGCGGAACT CTCGTGAACG CCCTCCTCAA TCACTGCAAA
GATCTTCAGG GAGTGGGAGG AAAGCTCCGG CCGGGAATAG TTCACAGGCT CGACAAAGAA
ACCTCCGGTG TCATAGTGGT AGCCAAGAAC GATTTTGCCC ATCAGAGCCT CTCGAAGCAG
TTCAAAGATC GAAAGGTGAA GAAAACTTAC ATACTCTTGG TGAAGGGTAG AGTGAAGAAA
GATGAAGGGG TTGTCGATCT TCCTCTCGCA AGGCATCCTG TTCTGAGGAT AAAAATGGCC
GTCGTTGAAA CAGGGAAGGA AGCGATCACG GAGTACCGAG TTCTGAAAAG GTTCGATGAC
GTTGCGACGC TCGTTCTCGC CTTTCCTAAA ACAGGTAGAA CACACCAGAT CAGGGTGCAC
ATGAAAAGCC TCGGGCATCC GATCATGGGA GACAAAATCT ACGGGAAGCC GAAAGAGGAT
GAGATCTTCG GAATAAAAAG GCAGATGCTT CACGCCCTGA AACTCGGTTT CTTCCACCCT
CGAACGGGCA AATGGATGGA GTTCGTCTCA CCTCTGCCAG AGGACTTCAA AGAAGCCATC
AGAAGGATCC ATGAGTACGT GAGGGAAAGA TCATGA
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| Protein sequence | MKVWRVEKRE EGWRLDQFLK EKTPSWISRS LIQKAIKEGK VKVNGQIKKP SYKLKEGEIV
EVDLPEKPQE ATVQPEEIEL KVLYEDRDIV VIDKPGDMIV HPVPSKLSGT LVNALLNHCK
DLQGVGGKLR PGIVHRLDKE TSGVIVVAKN DFAHQSLSKQ FKDRKVKKTY ILLVKGRVKK
DEGVVDLPLA RHPVLRIKMA VVETGKEAIT EYRVLKRFDD VATLVLAFPK TGRTHQIRVH
MKSLGHPIMG DKIYGKPKED EIFGIKRQML HALKLGFFHP RTGKWMEFVS PLPEDFKEAI
RRIHEYVRER S
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