More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_1981 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_1981  response regulator receiver domain-containing protein  100 
 
 
177 aa  362  1e-99  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.366163 
 
 
-
 
NC_010501  PputW619_2462  response regulator receiver protein  73.3 
 
 
176 aa  273  9e-73  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3484  response regulator receiver protein  73.3 
 
 
176 aa  270  1e-71  Pseudomonas putida KT2440  Bacteria  normal  0.180993  normal  0.620188 
 
 
-
 
NC_010322  PputGB1_2453  response regulator receiver protein  72.73 
 
 
176 aa  268  2.9999999999999997e-71  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2287  response regulator receiver protein  72.73 
 
 
176 aa  268  2.9999999999999997e-71  Pseudomonas putida F1  Bacteria  normal  0.0246688  normal  0.814678 
 
 
-
 
NC_012560  Avin_29160  Response regulator, CheY-like protein  51.33 
 
 
126 aa  114  1.0000000000000001e-24  Azotobacter vinelandii DJ  Bacteria  normal  0.310967  n/a   
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  35.38 
 
 
229 aa  80.1  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0108  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
465 aa  79  0.00000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000558041 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  34.71 
 
 
459 aa  78.6  0.00000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  41.51 
 
 
232 aa  77  0.0000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  35.34 
 
 
247 aa  76.6  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2356  PAS/PAC sensor hybrid histidine kinase  38.94 
 
 
764 aa  75.5  0.0000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.736998  normal  0.0891785 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  33.33 
 
 
118 aa  75.9  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  35.9 
 
 
126 aa  74.7  0.0000000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.102048 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  33.64 
 
 
448 aa  74.3  0.0000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  35.4 
 
 
196 aa  74.3  0.0000000000009  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  34.13 
 
 
365 aa  73.9  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  33.33 
 
 
197 aa  73.9  0.000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_007513  Syncc9902_1771  two component transcriptional regulator  36.36 
 
 
244 aa  73.9  0.000000000001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2021  two component transcriptional regulator, winged helix family  36.29 
 
 
236 aa  73.2  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.48021  normal  0.282737 
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  38.6 
 
 
228 aa  72.8  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6208  two component transcriptional regulator, winged helix family  36.72 
 
 
226 aa  73.2  0.000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  33.93 
 
 
229 aa  72.8  0.000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  35.71 
 
 
196 aa  72.4  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2426  DNA-binding response regulator  36.36 
 
 
237 aa  72.4  0.000000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  33.64 
 
 
448 aa  72.4  0.000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  38.26 
 
 
240 aa  72.4  0.000000000003  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  37.5 
 
 
228 aa  72.4  0.000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_009675  Anae109_1040  PAS/PAC sensor hybrid histidine kinase  38.89 
 
 
664 aa  72  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  37.4 
 
 
230 aa  72  0.000000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  31.97 
 
 
451 aa  72  0.000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_009441  Fjoh_3049  two component transcriptional regulator  34.58 
 
 
224 aa  71.6  0.000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  35.04 
 
 
195 aa  71.6  0.000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  31.21 
 
 
224 aa  71.2  0.000000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  34.23 
 
 
210 aa  71.2  0.000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0297  response regulator receiver protein  36.21 
 
 
121 aa  71.6  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.127858  normal  0.448356 
 
 
-
 
NC_007952  Bxe_B2490  histidine kinase  41.23 
 
 
554 aa  71.6  0.000000000006  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0329  response regulator receiver protein  36.21 
 
 
121 aa  71.2  0.000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.629137 
 
 
-
 
NC_007413  Ava_0649  response regulator receiver Signal transduction histidine kinase  31.3 
 
 
387 aa  71.2  0.000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.736737  normal  0.226718 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  33.57 
 
 
204 aa  71.2  0.000000000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2657  response regulator receiver protein  35 
 
 
128 aa  71.2  0.000000000007  Spirosoma linguale DSM 74  Bacteria  normal  0.0140925  normal  0.150861 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  34.82 
 
 
213 aa  71.2  0.000000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_007492  Pfl01_2004  two component, sigma-54 specific, Fis family transcriptional regulator  33.03 
 
 
478 aa  70.9  0.000000000009  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.753041 
 
 
-
 
NC_010625  Bphy_5630  histidine kinase  39.81 
 
 
714 aa  70.9  0.000000000009  Burkholderia phymatum STM815  Bacteria  normal  normal  0.11737 
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  30.53 
 
 
227 aa  70.9  0.000000000009  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  38.89 
 
 
225 aa  70.5  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_010676  Bphyt_5873  two component heavy metal response transcriptional regulator, winged helix family  39.45 
 
 
228 aa  70.5  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.247228  normal 
 
 
-
 
NC_011662  Tmz1t_2101  two component heavy metal response transcriptional regulator, winged helix family  33.75 
 
 
228 aa  70.5  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3722  response regulator receiver  30.88 
 
 
143 aa  70.9  0.00000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2069  two component heavy metal response transcriptional regulator  39.45 
 
 
228 aa  70.5  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.0102482  normal 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  38.89 
 
 
225 aa  70.9  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_011663  Sbal223_2046  two component transcriptional regulator, winged helix family  36.36 
 
 
226 aa  70.9  0.00000000001  Shewanella baltica OS223  Bacteria  normal  0.095715  hitchhiker  0.000000000691151 
 
 
-
 
NC_013037  Dfer_2749  two component, sigma54 specific, transcriptional regulator, Fis family  29.68 
 
 
486 aa  70.5  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.778475  normal  0.579466 
 
 
-
 
NC_011667  Tmz1t_2388  heavy metal response regulator  33.75 
 
 
228 aa  70.5  0.00000000001  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000142984  normal  0.119734 
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  31.21 
 
 
224 aa  70.1  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1133  two component transcriptional regulator, winged helix family  32.17 
 
 
217 aa  69.7  0.00000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1705  two component, sigma54 specific, Fis family transcriptional regulator  31.43 
 
 
502 aa  69.7  0.00000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  33.64 
 
 
486 aa  70.1  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_3143  response regulator receiver protein  32.23 
 
 
124 aa  70.1  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3458  multi-sensor signal transduction histidine kinase  37.5 
 
 
958 aa  69.3  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2380  response regulator receiver domain-containing protein  33.87 
 
 
528 aa  69.7  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0234  response regulator receiver protein  34.48 
 
 
121 aa  70.1  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.695764  normal  0.176079 
 
 
-
 
NC_011989  Avi_4079  chemotaxis receiver protein  35.34 
 
 
121 aa  70.1  0.00000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  35.2 
 
 
228 aa  70.1  0.00000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_0751  two component, sigma54 specific, Fis family transcriptional regulator  34.45 
 
 
485 aa  69.7  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0880271  normal 
 
 
-
 
NC_009052  Sbal_2050  two component transcriptional regulator  35.45 
 
 
226 aa  70.1  0.00000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1484  response regulator receiver protein  33.87 
 
 
527 aa  70.1  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0535402  n/a   
 
 
-
 
NC_011886  Achl_0978  two component transcriptional regulator, winged helix family  32.28 
 
 
254 aa  69.3  0.00000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0385223 
 
 
-
 
NC_009439  Pmen_1731  two component transcriptional regulator  34.65 
 
 
236 aa  69.3  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.135854  normal 
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  36.59 
 
 
226 aa  68.9  0.00000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2301  two component transcriptional regulator  35.45 
 
 
226 aa  68.9  0.00000000003  Shewanella baltica OS185  Bacteria  hitchhiker  0.00729091  n/a   
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  29.51 
 
 
391 aa  68.9  0.00000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01607  PilL protein  35 
 
 
2301 aa  68.9  0.00000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.68194  n/a   
 
 
-
 
NC_011891  A2cp1_1579  response regulator receiver protein  33.87 
 
 
527 aa  69.3  0.00000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  33.04 
 
 
205 aa  69.3  0.00000000003  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009997  Sbal195_2416  two component transcriptional regulator  35.45 
 
 
226 aa  68.9  0.00000000004  Shewanella baltica OS195  Bacteria  normal  0.134995  hitchhiker  0.000110965 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  33.63 
 
 
229 aa  68.9  0.00000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_007777  Francci3_0978  two component transcriptional regulator  32.54 
 
 
321 aa  68.6  0.00000000004  Frankia sp. CcI3  Bacteria  normal  0.323902  normal 
 
 
-
 
NC_007794  Saro_1631  two component transcriptional regulator  38.53 
 
 
227 aa  68.9  0.00000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  hitchhiker  0.0039171  n/a   
 
 
-
 
NC_014248  Aazo_0463  response regulator receiver modulated diguanylate phosphodiesterase  34.19 
 
 
403 aa  68.9  0.00000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  37.5 
 
 
228 aa  68.6  0.00000000005  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_008009  Acid345_0509  two component transcriptional regulator  29.36 
 
 
232 aa  68.6  0.00000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163629  normal 
 
 
-
 
NC_009483  Gura_0925  two component, sigma-54 specific, Fis family transcriptional regulator  33.33 
 
 
500 aa  68.2  0.00000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_2155  CheA signal transduction histidine kinase  30.51 
 
 
1609 aa  68.6  0.00000000005  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  35.14 
 
 
200 aa  68.6  0.00000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0239  response regulator receiver domain-containing protein  38.21 
 
 
132 aa  68.2  0.00000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
210 aa  68.2  0.00000000006  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  36.72 
 
 
228 aa  68.2  0.00000000006  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
210 aa  68.2  0.00000000006  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
210 aa  68.2  0.00000000006  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_007517  Gmet_2308  response regulator receiver protein  33.61 
 
 
123 aa  67.8  0.00000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  33.59 
 
 
237 aa  67.8  0.00000000007  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2442  two component, sigma54 specific, Fis family transcriptional regulator  32.06 
 
 
441 aa  67.8  0.00000000008  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  34.55 
 
 
194 aa  67.8  0.00000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2521  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
475 aa  67.4  0.00000000009  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0633509 
 
 
-
 
NC_009943  Dole_0886  response regulator receiver protein  34.13 
 
 
207 aa  67.4  0.0000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0816  response regulator receiver protein  34.58 
 
 
157 aa  67  0.0000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_29000  sigma54-dependent response regulator, two-component  34.43 
 
 
472 aa  67  0.0000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.99042  n/a   
 
 
-
 
NC_007604  Synpcc7942_0556  two component transcriptional regulator  28.35 
 
 
237 aa  67  0.0000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.451756  normal 
 
 
-
 
NC_010002  Daci_0123  two component transcriptional regulator  34.92 
 
 
241 aa  67.4  0.0000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
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