| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2021 |
|---|
| Symbol | |
|---|
| ID | 8333365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2286880 |
|---|
| End bp | 2287590 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644955171 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003112782 |
|---|
| Protein GI | 256391218 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.48021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.282737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGGT TGCTCGTCGT CGACGATGAG GCGCAGCTGT TGGTGGCGGT CCGCATCAAC
TTGTCGGCGC GCGGATACGA GGTGAGCGTC GCCCCCGACG GCACCACCGG CCTGGCCGTC
GCCGCGCGCC GTCCCCCGGA CCTGGTGGTC CTGGACCTGG GCCTGCCGGA CATGGACGGC
GTCCAGGTCA TCGACGGACT GCGCGGCTGG ACCACGGTGC CGATCCTGGT GCTGTCCGGG
CGCACCGAGT CCTGGGACAA GGTCGAGGCG CTGGACGCCG GCGCCGACGA CTTCGTCACC
AAGCCCTTCG ACATGGACGA GCTGGCCGCG CGGGTCAGAT CGCTGCTGCG GCGCGCGGAG
CCGGAGAACG CGACCGGGCC GGTCATCCAG GTCGGCCACC ACCTCGTCGA CCTCGCGGCC
CGCACGGTCA AGCGCGCTCC CGGGGCGCCC TCGGACGTGC CGGAGTCGGT GCGCCTGACC
CGCACCGAAT GGGCCGTGTT GGAGATGCTG CTGCGCCACC CCGACCGCCT GGTCTCCAGC
AAGCAGCTGC TGGCCCATGT GTGGGGGACC GAGCACGAGC CGGAGGGCAG CTATCTCCGC
TTCTACCTCG CGCGGCTGCG GCAGAAGCTG GAGCCCGAGC CCTCAACTCC GCGCCAGCTG
CTGACCGAGC CGGGCATGGG CTACCGCTTC CAGCCGCTGG GCAGCCCGTA G
|
|---|
| Protein sequence | MKRLLVVDDE AQLLVAVRIN LSARGYEVSV APDGTTGLAV AARRPPDLVV LDLGLPDMDG
VQVIDGLRGW TTVPILVLSG RTESWDKVEA LDAGADDFVT KPFDMDELAA RVRSLLRRAE
PENATGPVIQ VGHHLVDLAA RTVKRAPGAP SDVPESVRLT RTEWAVLEML LRHPDRLVSS
KQLLAHVWGT EHEPEGSYLR FYLARLRQKL EPEPSTPRQL LTEPGMGYRF QPLGSP
|
|---|
| |