More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0978 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0978  two component transcriptional regulator  100 
 
 
321 aa  620  1e-177  Frankia sp. CcI3  Bacteria  normal  0.323902  normal 
 
 
-
 
NC_013595  Sros_0132  response regulator receiver protein  65.2 
 
 
231 aa  275  6e-73  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1197  response regulator receiver  64.91 
 
 
230 aa  274  2.0000000000000002e-72  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1090  two component transcriptional regulator  64.89 
 
 
230 aa  270  2.9999999999999997e-71  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0839689 
 
 
-
 
NC_008541  Arth_1441  two component transcriptional regulator  64.13 
 
 
247 aa  268  5.9999999999999995e-71  Arthrobacter sp. FB24  Bacteria  normal  0.167327  n/a   
 
 
-
 
NC_013947  Snas_0721  two component transcriptional regulator, winged helix family  61.95 
 
 
233 aa  261  2e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.811558  normal 
 
 
-
 
NC_012669  Bcav_3086  two component transcriptional regulator, winged helix family  61.82 
 
 
233 aa  245  9e-64  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.151774  normal  0.916258 
 
 
-
 
NC_013235  Namu_1193  two component transcriptional regulator, winged helix family  60.18 
 
 
240 aa  244  1.9999999999999999e-63  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  56.96 
 
 
232 aa  237  2e-61  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8286  two component transcriptional regulator, winged helix family  61.71 
 
 
266 aa  231  1e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.691187  normal  0.348936 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  48.9 
 
 
231 aa  224  2e-57  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  48.46 
 
 
231 aa  223  3e-57  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  50.67 
 
 
229 aa  222  8e-57  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  47.32 
 
 
229 aa  219  3.9999999999999997e-56  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  50.22 
 
 
229 aa  218  7.999999999999999e-56  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_008528  OEOE_0105  DNA-binding response regulator  48.09 
 
 
237 aa  214  9.999999999999999e-55  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  51.77 
 
 
230 aa  211  1e-53  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  50 
 
 
229 aa  211  2e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  50.45 
 
 
231 aa  209  4e-53  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  52.4 
 
 
229 aa  209  6e-53  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  50.88 
 
 
237 aa  208  8e-53  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  53.1 
 
 
233 aa  208  1e-52  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  51.3 
 
 
235 aa  207  1e-52  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  50.88 
 
 
229 aa  207  2e-52  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  50.22 
 
 
228 aa  207  2e-52  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  47.32 
 
 
227 aa  207  2e-52  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  48.68 
 
 
228 aa  206  3e-52  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  46.7 
 
 
232 aa  207  3e-52  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2443  two component transcriptional regulator, winged helix family  50.67 
 
 
224 aa  206  4e-52  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00121019 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  48.23 
 
 
226 aa  206  4e-52  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  47.79 
 
 
226 aa  206  5e-52  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  46.72 
 
 
233 aa  205  9e-52  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  44.05 
 
 
230 aa  204  2e-51  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  49.78 
 
 
230 aa  203  3e-51  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  47.16 
 
 
229 aa  203  3e-51  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  51.54 
 
 
236 aa  203  4e-51  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_012791  Vapar_2988  two component transcriptional regulator, winged helix family  48.68 
 
 
242 aa  203  4e-51  Variovorax paradoxus S110  Bacteria  normal  0.410423  n/a   
 
 
-
 
NC_007948  Bpro_0543  two component transcriptional regulator  49.33 
 
 
241 aa  203  4e-51  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  49.57 
 
 
231 aa  203  4e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0470  two component transcriptional regulator, winged helix family  50.44 
 
 
239 aa  202  4e-51  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0260801  normal 
 
 
-
 
NC_008541  Arth_2712  two component transcriptional regulator  49.78 
 
 
224 aa  203  4e-51  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00552555  n/a   
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  49.12 
 
 
225 aa  202  5e-51  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  47.77 
 
 
228 aa  202  6e-51  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  50.43 
 
 
226 aa  202  6e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_013174  Jden_1827  two component transcriptional regulator, winged helix family  49.55 
 
 
227 aa  202  8e-51  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.49 
 
 
229 aa  202  8e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  47.77 
 
 
235 aa  202  9e-51  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1673  two component transcriptional regulator, winged helix family  44.93 
 
 
233 aa  201  9e-51  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  44.3 
 
 
232 aa  202  9e-51  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5426  two component transcriptional regulator  46.64 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  46.35 
 
 
236 aa  201  9.999999999999999e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  47.77 
 
 
228 aa  201  9.999999999999999e-51  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  47.77 
 
 
228 aa  201  9.999999999999999e-51  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  47.77 
 
 
228 aa  201  9.999999999999999e-51  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  51.56 
 
 
237 aa  200  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  50 
 
 
226 aa  201  1.9999999999999998e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  49.12 
 
 
236 aa  200  1.9999999999999998e-50  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_010320  Teth514_0439  two component transcriptional regulator  43.95 
 
 
225 aa  200  3e-50  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000223011  n/a   
 
 
-
 
NC_013093  Amir_6310  two component transcriptional regulator, winged helix family  45.66 
 
 
261 aa  200  3e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.534044  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  47.23 
 
 
235 aa  200  3e-50  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  47.32 
 
 
228 aa  200  3e-50  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_009012  Cthe_1916  two component transcriptional regulator  44.74 
 
 
228 aa  200  3e-50  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.400732  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  49.33 
 
 
227 aa  199  3.9999999999999996e-50  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_010002  Daci_3071  two component transcriptional regulator  48.67 
 
 
238 aa  199  3.9999999999999996e-50  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.000985444  normal 
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  46.29 
 
 
242 aa  199  3.9999999999999996e-50  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_007952  Bxe_B0815  two component transcriptional regulator  44.94 
 
 
248 aa  199  3.9999999999999996e-50  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.348891 
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  48.67 
 
 
226 aa  199  3.9999999999999996e-50  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  46.7 
 
 
247 aa  199  5e-50  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_0307  two component transcriptional regulator, winged helix family  47.39 
 
 
242 aa  199  5e-50  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  47.75 
 
 
231 aa  199  5e-50  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  47.19 
 
 
234 aa  199  5e-50  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0295  two component transcriptional regulator, winged helix family  47.39 
 
 
242 aa  199  5e-50  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  50.67 
 
 
225 aa  199  6e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
NC_011830  Dhaf_2918  two component transcriptional regulator, winged helix family  41.74 
 
 
232 aa  199  7e-50  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_14770  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  51.1 
 
 
226 aa  199  7e-50  Micrococcus luteus NCTC 2665  Bacteria  normal  0.383411  n/a   
 
 
-
 
NC_013521  Sked_09340  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.79 
 
 
223 aa  198  7.999999999999999e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.217912  normal  0.763127 
 
 
-
 
NC_007777  Francci3_0471  two component transcriptional regulator  49.34 
 
 
226 aa  198  9e-50  Frankia sp. CcI3  Bacteria  normal  normal  0.734397 
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  45.33 
 
 
230 aa  198  9e-50  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  46.29 
 
 
242 aa  198  1.0000000000000001e-49  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  43.97 
 
 
239 aa  197  1.0000000000000001e-49  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  48.25 
 
 
225 aa  198  1.0000000000000001e-49  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_011662  Tmz1t_2259  osmolarity response regulator  45.9 
 
 
257 aa  198  1.0000000000000001e-49  Thauera sp. MZ1T  Bacteria  normal  0.0634187  n/a   
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  47.35 
 
 
226 aa  198  1.0000000000000001e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  47.32 
 
 
235 aa  197  1.0000000000000001e-49  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  44.89 
 
 
256 aa  197  1.0000000000000001e-49  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  43.97 
 
 
239 aa  197  1.0000000000000001e-49  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  48.67 
 
 
230 aa  197  2.0000000000000003e-49  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  45.74 
 
 
235 aa  197  2.0000000000000003e-49  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  43.86 
 
 
230 aa  197  2.0000000000000003e-49  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_009253  Dred_2981  two component transcriptional regulator  46.88 
 
 
229 aa  197  2.0000000000000003e-49  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000201285  n/a   
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  43.81 
 
 
230 aa  197  2.0000000000000003e-49  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  43.75 
 
 
229 aa  196  3e-49  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  46.7 
 
 
243 aa  196  3e-49  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009380  Strop_0624  two component transcriptional regulator  51.98 
 
 
240 aa  197  3e-49  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  46.7 
 
 
243 aa  196  3e-49  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  44.35 
 
 
240 aa  196  3e-49  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1847  two component transcriptional regulator  43.91 
 
 
234 aa  196  3e-49  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00000121968  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  44.93 
 
 
228 aa  196  4.0000000000000005e-49  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  45.74 
 
 
235 aa  196  4.0000000000000005e-49  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013510  Tcur_4043  two component transcriptional regulator, winged helix family  48.23 
 
 
225 aa  196  4.0000000000000005e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  0.728877  n/a   
 
 
-
 
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