More than 300 homologs were found in PanDaTox collection
for query gene Cphy_1090 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_1090  binding-protein-dependent transport systems inner membrane component  100 
 
 
294 aa  587  1e-166  Clostridium phytofermentans ISDg  Bacteria  normal  0.909661  n/a   
 
 
-
 
NC_011830  Dhaf_2160  binding-protein-dependent transport systems inner membrane component  45.42 
 
 
292 aa  259  3e-68  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.07173  n/a   
 
 
-
 
NC_011830  Dhaf_1667  binding-protein-dependent transport systems inner membrane component  44.69 
 
 
290 aa  235  5.0000000000000005e-61  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0492  binding-protein-dependent transport systems inner membrane component  43.36 
 
 
290 aa  224  1e-57  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0262596 
 
 
-
 
NC_009012  Cthe_2126  binding-protein-dependent transport systems inner membrane component  38.87 
 
 
284 aa  194  2e-48  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  32.14 
 
 
314 aa  134  9.999999999999999e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  32.14 
 
 
314 aa  134  9.999999999999999e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
308 aa  132  6e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  30.5 
 
 
316 aa  130  3e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  29.82 
 
 
314 aa  130  3e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  29.69 
 
 
315 aa  125  8.000000000000001e-28  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
306 aa  125  1e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
353 aa  124  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
420 aa  123  3e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
420 aa  123  4e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
316 aa  122  6e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
317 aa  122  6e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  32.31 
 
 
287 aa  122  7e-27  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  30.52 
 
 
299 aa  122  7e-27  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
313 aa  122  7e-27  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
314 aa  120  3e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  27.84 
 
 
283 aa  120  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7905  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
336 aa  120  3.9999999999999996e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  26.33 
 
 
293 aa  119  3.9999999999999996e-26  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  25.98 
 
 
293 aa  119  6e-26  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013595  Sros_4987  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
292 aa  119  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.753078  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
294 aa  119  7.999999999999999e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
305 aa  119  7.999999999999999e-26  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_012880  Dd703_0068  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
315 aa  119  7.999999999999999e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0513  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
314 aa  118  9e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  29.89 
 
 
294 aa  118  9.999999999999999e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  27.95 
 
 
318 aa  118  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  27.93 
 
 
300 aa  117  1.9999999999999998e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
307 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  27.55 
 
 
318 aa  115  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  30.35 
 
 
314 aa  115  6.9999999999999995e-25  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_010816  BLD_0193  MalF-type ABC sugar transport systems permease component  29.08 
 
 
312 aa  115  6.9999999999999995e-25  Bifidobacterium longum DJO10A  Bacteria  normal  0.192938  n/a   
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
317 aa  115  8.999999999999998e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
321 aa  115  8.999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  28.37 
 
 
310 aa  115  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_009718  Fnod_0395  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
436 aa  114  1.0000000000000001e-24  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  30.28 
 
 
291 aa  115  1.0000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  29.11 
 
 
321 aa  114  2.0000000000000002e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
306 aa  114  2.0000000000000002e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
291 aa  114  2.0000000000000002e-24  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  29.49 
 
 
309 aa  114  3e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
314 aa  113  3e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
306 aa  113  4.0000000000000004e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
307 aa  113  4.0000000000000004e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  27.91 
 
 
307 aa  113  4.0000000000000004e-24  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
292 aa  112  5e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
307 aa  113  5e-24  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  27.15 
 
 
321 aa  112  6e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013517  Sterm_4036  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
291 aa  112  6e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
293 aa  112  6e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_013172  Bfae_05100  permease component of ABC-type sugar transporter  32.1 
 
 
316 aa  112  7.000000000000001e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  28.43 
 
 
308 aa  112  8.000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  28.9 
 
 
319 aa  111  1.0000000000000001e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_013131  Caci_3156  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
304 aa  111  1.0000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.024116  normal  0.392098 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  28.19 
 
 
310 aa  110  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_009616  Tmel_1616  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
429 aa  111  2.0000000000000002e-23  Thermosipho melanesiensis BI429  Bacteria  normal  0.225919  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
295 aa  110  2.0000000000000002e-23  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  26.85 
 
 
309 aa  110  3e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  29.9 
 
 
316 aa  110  3e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
317 aa  110  4.0000000000000004e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
307 aa  110  4.0000000000000004e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
298 aa  109  4.0000000000000004e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  26.53 
 
 
318 aa  109  5e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_3365  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
292 aa  109  6e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_3894  binding-protein-dependent transport systems inner membrane component  33.51 
 
 
326 aa  109  7.000000000000001e-23  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  30 
 
 
318 aa  108  7.000000000000001e-23  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  26.96 
 
 
320 aa  108  1e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  27.76 
 
 
321 aa  108  1e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
295 aa  108  1e-22  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3147  binding-protein-dependent transport systems inner membrane component  28.29 
 
 
319 aa  107  2e-22  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00382098  n/a   
 
 
-
 
NC_013172  Bfae_06280  permease component of ABC-type sugar transporter  29.05 
 
 
303 aa  107  2e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
316 aa  107  2e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  28.68 
 
 
287 aa  107  2e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_009667  Oant_2484  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
318 aa  107  3e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575298  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
310 aa  107  3e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3558  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
295 aa  106  5e-22  Chelativorans sp. BNC1  Bacteria  normal  0.727517  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  28.8 
 
 
288 aa  106  5e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
292 aa  105  6e-22  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  28.68 
 
 
315 aa  106  6e-22  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
320 aa  105  7e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
319 aa  105  7e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  28.22 
 
 
325 aa  105  8e-22  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  26.71 
 
 
292 aa  105  9e-22  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_013525  Tter_0125  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
302 aa  105  9e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4689  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
298 aa  105  1e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.664924 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
293 aa  104  1e-21  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_010003  Pmob_1377  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
453 aa  105  1e-21  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  28 
 
 
310 aa  104  2e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1704  putative transport system permease ABC transporter protein  28.35 
 
 
324 aa  104  2e-21  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  28 
 
 
310 aa  104  2e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  27.59 
 
 
289 aa  103  2e-21  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  28 
 
 
300 aa  104  2e-21  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  27.63 
 
 
314 aa  104  2e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  26.46 
 
 
309 aa  104  2e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_0718  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
319 aa  104  2e-21  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.491906  n/a   
 
 
-
 
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