More than 300 homologs were found in PanDaTox collection
for query gene Caci_0889 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_0889  binding-protein-dependent transport systems inner membrane component  100 
 
 
302 aa  604  9.999999999999999e-173  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.505045  normal  0.0752536 
 
 
-
 
NC_008541  Arth_1707  binding-protein-dependent transport systems inner membrane component  45.24 
 
 
303 aa  280  3e-74  Arthrobacter sp. FB24  Bacteria  normal  0.384192  n/a   
 
 
-
 
NC_013131  Caci_0627  binding-protein-dependent transport systems inner membrane component  47.02 
 
 
315 aa  261  8.999999999999999e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.266328 
 
 
-
 
NC_013595  Sros_2253  sugar ABC transporter (permease)  44.79 
 
 
281 aa  248  1e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  0.587405  normal  0.273878 
 
 
-
 
NC_008261  CPF_0558  ABC transporter, permease protein  32.95 
 
 
293 aa  167  2e-40  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0542  transmembrane transport protein  32.57 
 
 
293 aa  167  2.9999999999999998e-40  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0623  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
285 aa  163  4.0000000000000004e-39  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.587185  n/a   
 
 
-
 
NC_010001  Cphy_1531  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
275 aa  161  2e-38  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3244  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
279 aa  155  9e-37  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2714  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
288 aa  154  1e-36  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A2104  permease protein  31.8 
 
 
329 aa  154  1e-36  Bacillus cereus AH187  Bacteria  normal  0.377288  n/a   
 
 
-
 
NC_013131  Caci_2110  binding-protein-dependent transport systems inner membrane component  37.15 
 
 
316 aa  154  2e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.523457 
 
 
-
 
NC_013172  Bfae_23830  ABC-type sugar transport system, permease component  34.21 
 
 
303 aa  153  4e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0575  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
292 aa  152  5.9999999999999996e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1043  binding-protein-dependent transport systems inner membrane component  37.36 
 
 
273 aa  152  7e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  decreased coverage  0.00118636  normal  0.712976 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
299 aa  150  2e-35  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3350  binding-protein-dependent transport systems inner membrane component  38.52 
 
 
274 aa  150  2e-35  Variovorax paradoxus S110  Bacteria  normal  0.610127  n/a   
 
 
-
 
NC_013515  Smon_0143  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
294 aa  149  5e-35  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3994  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
303 aa  148  9e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.947348 
 
 
-
 
NC_011368  Rleg2_4664  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
294 aa  147  2.0000000000000003e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.829969 
 
 
-
 
NC_007802  Jann_4088  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
275 aa  147  2.0000000000000003e-34  Jannaschia sp. CCS1  Bacteria  normal  normal  0.350213 
 
 
-
 
NC_008541  Arth_3148  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
311 aa  147  2.0000000000000003e-34  Arthrobacter sp. FB24  Bacteria  decreased coverage  0.00417428  n/a   
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
271 aa  147  3e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13120  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
281 aa  147  3e-34  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3677  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
304 aa  146  5e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.842824 
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
274 aa  145  6e-34  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4749  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
294 aa  145  6e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.377096 
 
 
-
 
NC_007760  Adeh_4134  ABC sugar transporter, inner membrane subunit  36.82 
 
 
295 aa  144  1e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3320  binding-protein-dependent transport systems inner membrane component  29.93 
 
 
306 aa  144  1e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.516891  normal 
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  35.6 
 
 
275 aa  145  1e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_011891  A2cp1_4287  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
293 aa  144  1e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3493  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
316 aa  145  1e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.552575 
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
277 aa  144  2e-33  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_014158  Tpau_1201  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
277 aa  144  2e-33  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
293 aa  144  2e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
282 aa  143  4e-33  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_012848  Rleg_4709  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
278 aa  142  6e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1818  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
279 aa  142  7e-33  Thermosipho melanesiensis BI429  Bacteria  normal  0.675174  n/a   
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  33.98 
 
 
291 aa  141  9.999999999999999e-33  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  33.98 
 
 
291 aa  141  9.999999999999999e-33  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
283 aa  142  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_013171  Apre_1668  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
284 aa  140  3e-32  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.771633  n/a   
 
 
-
 
NC_007778  RPB_2099  binding-protein dependent transport system inner membrane protein  30.16 
 
 
307 aa  140  3e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.642563  decreased coverage  0.0000998416 
 
 
-
 
NC_008786  Veis_2280  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
280 aa  140  3e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.326107  normal 
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
316 aa  139  3.9999999999999997e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012792  Vapar_6267  binding-protein-dependent transport systems inner membrane component  32 
 
 
296 aa  139  3.9999999999999997e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
278 aa  139  4.999999999999999e-32  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
278 aa  139  4.999999999999999e-32  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3981  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
278 aa  139  7e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4055  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
278 aa  139  7e-32  Mycobacterium sp. KMS  Bacteria  normal  normal  0.898469 
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
288 aa  139  7.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_009953  Sare_0749  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
306 aa  138  8.999999999999999e-32  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00175385 
 
 
-
 
NC_007333  Tfu_1617  putative binding-protein-dependent transport protein  30.52 
 
 
304 aa  138  1e-31  Thermobifida fusca YX  Bacteria  normal  0.201797  n/a   
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  30.68 
 
 
275 aa  137  1e-31  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_009832  Spro_2524  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
281 aa  138  1e-31  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3995  binding-protein-dependent transport systems inner membrane component  36.8 
 
 
278 aa  138  1e-31  Mycobacterium sp. JLS  Bacteria  normal  0.273063  normal  0.368954 
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
287 aa  137  2e-31  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_012669  Bcav_3773  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
279 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.468941  normal 
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
283 aa  136  3.0000000000000003e-31  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_013093  Amir_3474  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
280 aa  136  4e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.183676  n/a   
 
 
-
 
NC_007509  Bcep18194_C6935  ABC sugar transporter, inner membrane subunit  31.35 
 
 
300 aa  136  5e-31  Burkholderia sp. 383  Bacteria  normal  0.111402  normal  0.938789 
 
 
-
 
NC_007948  Bpro_3817  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
283 aa  136  5e-31  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3644  binding-protein-dependent transport systems inner membrane component  30.55 
 
 
306 aa  135  6.0000000000000005e-31  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.433095 
 
 
-
 
NC_009485  BBta_3556  putative ABC transporter permease protein  30.18 
 
 
302 aa  135  9e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3050  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
294 aa  134  9.999999999999999e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0399924  normal  0.454019 
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
305 aa  134  9.999999999999999e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
281 aa  134  9.999999999999999e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0809  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
281 aa  135  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0202  binding-protein-dependent transport systems inner membrane component  28.47 
 
 
284 aa  134  1.9999999999999998e-30  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2857  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
298 aa  134  1.9999999999999998e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.705306  normal 
 
 
-
 
NC_013595  Sros_2192  putative sugar ABC transporter, permease protein  31.37 
 
 
283 aa  134  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1868  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
276 aa  134  1.9999999999999998e-30  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
273 aa  134  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11262  sugar-transport integral membrane protein ABC transporter sugB  36.51 
 
 
274 aa  134  1.9999999999999998e-30  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00203297 
 
 
-
 
NC_013530  Xcel_2795  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
298 aa  133  3e-30  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_06510  carbohydrate ABC transporter membrane protein  34.47 
 
 
282 aa  133  3e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2657  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
283 aa  133  3e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4646  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
273 aa  133  3.9999999999999996e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00194673 
 
 
-
 
NC_004578  PSPTO_0887  sugar ABC transporter, permease protein  35.74 
 
 
280 aa  133  3.9999999999999996e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.453961  n/a   
 
 
-
 
NC_013595  Sros_2049  sugar ABC transporter (permease)  29.67 
 
 
303 aa  133  3.9999999999999996e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.907779  normal 
 
 
-
 
NC_013526  Tter_2001  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
284 aa  133  3.9999999999999996e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.757856  n/a   
 
 
-
 
NC_007484  Noc_0280  ABC transporter, inner membrane subunit  34.03 
 
 
280 aa  132  5e-30  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.787211  n/a   
 
 
-
 
NC_013131  Caci_2678  binding-protein-dependent transport systems inner membrane component  30.64 
 
 
289 aa  132  5e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2308  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
283 aa  133  5e-30  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000390677  n/a   
 
 
-
 
NC_013739  Cwoe_4423  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
279 aa  132  5e-30  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.389703 
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  31.79 
 
 
283 aa  132  6e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0760  binding-protein dependent transport system inner membrane protein  34.77 
 
 
280 aa  132  6.999999999999999e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0312496  normal  0.789995 
 
 
-
 
NC_004311  BRA0750  sugar ABC transporter, permease protein, putative  31.73 
 
 
275 aa  132  7.999999999999999e-30  Brucella suis 1330  Bacteria  normal  0.688885  n/a   
 
 
-
 
NC_008010  Dgeo_2724  binding-protein-dependent transport systems inner membrane component  37.35 
 
 
290 aa  132  9e-30  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.191447  n/a   
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
286 aa  132  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012792  Vapar_5701  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
278 aa  132  1.0000000000000001e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0260  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
280 aa  131  1.0000000000000001e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2694  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
279 aa  132  1.0000000000000001e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4615  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
295 aa  132  1.0000000000000001e-29  Frankia sp. EAN1pec  Bacteria  normal  0.60944  normal 
 
 
-
 
NC_009667  Oant_0311  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
292 aa  131  1.0000000000000001e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.466995  n/a   
 
 
-
 
NC_009504  BOV_A0700  putative sugar ABC transporter, permease protein  31.73 
 
 
275 aa  131  1.0000000000000001e-29  Brucella ovis ATCC 25840  Bacteria  normal  0.480284  n/a   
 
 
-
 
NC_013595  Sros_7693  putative transmembrane permease component of ABC transporter  35.09 
 
 
286 aa  131  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.673988 
 
 
-
 
NC_013172  Bfae_27720  ABC-type sugar transport system, permease component  31.23 
 
 
284 aa  131  1.0000000000000001e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  0.333543  n/a   
 
 
-
 
NC_009664  Krad_1115  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
280 aa  131  1.0000000000000001e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.565272 
 
 
-
 
NC_014151  Cfla_1128  binding-protein-dependent transport systems inner membrane component  29.82 
 
 
293 aa  130  2.0000000000000002e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0624061  hitchhiker  0.00160002 
 
 
-
 
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