Gene RPD_3320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3320 
Symbol 
ID4023830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3678818 
End bp3679738 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content60% 
IMG OID637963524 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_570445 
Protein GI91977786 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.516891 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAGA CCACCGCATC CGATCCGCGC CTCGCCAAAT CGCCGACCAT GACCAAGGAC 
GACGACAGCG AGGGCATGAG CTATCTGGAG TCGCTGCCGC GACGGCTGGT GACGCTGTAT
CTGCCGCTGT TCATCATCGT CGTGATCCTG TTGTTCCCGT TTTACTGGAT GGCGCTGACC
TCGATCAAAC CCGACGAGCA GCTGATCGAC ATGGAGACCT ACAACCCGTT CTGGGTTGTG
AAGCCGACGC TGAAGCACAT CTCGAAGCTG CTGTTCGAGA CGCAATATCC GCGCTGGCTG
TGGAACACGA TGTATGTCGC TGCGGCGGCG ACCACGCTGT CGATCGTGGC CAGCGTGCTC
GCGGCCTATG CGATCGTGCG GTTGCGATTC CGCGGCGCCG ACAGCGTCGG CGGCGCGATC
TTTCTCGCTT ATCTGGTGCC GCCCTCGATC CTGTTTATTC CGCTGGCGTC GGTGATCCAG
GCTTACGGCC TGTTCGACTC GCCGCTGTCG TTGATCCTGG TGTATCCGAC GCTGCTGATC
CCGTTCTCGA CCTGGCTCTT GATGGGCTAT TTCAAGACCA TCCCGTTCGA GCTCGAGGAA
TGCGCACTGA TCGACGGCGC CTCGCGCTGG CAGATCCTCA CCAAGATCAT CGTGCCGCTG
GCGGTGCCCG GATTGATCTC GGCCTTTATC TTCTCGTTCA CGCTGTGCTG GAACGAGTTC
ATCTACGCGT TGACCTTTCT GCAATCGACG CCGAACAAGA CCGTGCCGGT CGCGATCGTC
AACGAATTCG TCGACGGCGA CATTTACAAA TGGGGCTCGC TGATGGCCGG CGCGCTGGTC
GGCTCGCTGC CGCTGGTCAT CCTCTACGCA TTCTTCGTCG AGCACTACGT CTCGGCGATG
ACGGGTGCCG TCAAGGAATA G
 
Protein sequence
MTETTASDPR LAKSPTMTKD DDSEGMSYLE SLPRRLVTLY LPLFIIVVIL LFPFYWMALT 
SIKPDEQLID METYNPFWVV KPTLKHISKL LFETQYPRWL WNTMYVAAAA TTLSIVASVL
AAYAIVRLRF RGADSVGGAI FLAYLVPPSI LFIPLASVIQ AYGLFDSPLS LILVYPTLLI
PFSTWLLMGY FKTIPFELEE CALIDGASRW QILTKIIVPL AVPGLISAFI FSFTLCWNEF
IYALTFLQST PNKTVPVAIV NEFVDGDIYK WGSLMAGALV GSLPLVILYA FFVEHYVSAM
TGAVKE