| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0627 |
|---|
| Symbol | |
|---|
| ID | 8331956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 731619 |
|---|
| End bp | 732566 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644953779 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003111404 |
|---|
| Protein GI | 256389840 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.266328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CGACGACCGG GTCCCGCGCT GAGAGCGCGG CGCGGGACCC CAAGAGGGAC
CTCAGGAGGG ACCCCAGGAG GGACCCCAAG ACGCCGGCGG CGGTTTCCGC CGGCCGCCGC
CGGATCCCCT GGGCCCGGCT GCCGGGTTCC GCGCTGATCT GGCTGTTCGT CGCCTTCTGC
GCGTTCACGT TCCTGTTCAT CCTGCTCAGC TCGCTGAAGT CCAGCTACAA CGTGCTGAAC
CACCCCTTCC GGCTGCCGAC CGAGCTGAAG TTCGCCAACT GGAGCAAGGC CTGGCACGAC
GGCGGCTTCG GGCCGGCGTT CGTGAACTCG GTGCTGGTGG TCGCGGTGGC GGCGGCCGGG
ACGGTGCTGC TGGCCTCGCC GGCGGCGTAC GTGCTGGGCC GCAACCAGAA CCGCGTGTCC
GGCGGCGTGA GCATGTACTT CGTGCTGGGG CTGGGCATCC CGATGCAGAT CATCGTGCTG
CCGCTGTATT CGATCATGGC CAAGATGCAC CTGATCGACA ATCTCGCCGG GCTGATCGTG
CTCTACGTCG TGGTGAACCT GCCGTTCACG GTGTACCTGC TGATGTCGTT CTTCGCCTCG
CTGCCGGGGG AGCTGGAGGA GGCCGCGGCG CTGGACGGCG TGGGCCCGGG GATGACGTTC
TGGCGGATCA TGCTGCCGCT GGCCAAGGGC GGGCTGATGA CGGCGCTGAC GCTGGTGGCG
ATCGCGTGCT GGAACGAGAC GTTCCTGGCG CTGATGTTCC TGCAGACCAA TGACAACTTC
ACGCTGCCGC TGGCGTTGGT CAACTTCCTG ACCCAGCAGC AGTTCACCGG CGAGGACTTC
GGCGTGATGT TCGCCGGGGT GTCCATCGCG GTGCTGCCCA TGCTCGCGCT CTACGCGTGG
CTCGGGCGCC GGATCACCGA GGGCTTGACC CTCGGAGCGG GGAAGTAG
|
|---|
| Protein sequence | MSAATTGSRA ESAARDPKRD LRRDPRRDPK TPAAVSAGRR RIPWARLPGS ALIWLFVAFC
AFTFLFILLS SLKSSYNVLN HPFRLPTELK FANWSKAWHD GGFGPAFVNS VLVVAVAAAG
TVLLASPAAY VLGRNQNRVS GGVSMYFVLG LGIPMQIIVL PLYSIMAKMH LIDNLAGLIV
LYVVVNLPFT VYLLMSFFAS LPGELEEAAA LDGVGPGMTF WRIMLPLAKG GLMTALTLVA
IACWNETFLA LMFLQTNDNF TLPLALVNFL TQQQFTGEDF GVMFAGVSIA VLPMLALYAW
LGRRITEGLT LGAGK
|
|---|
| |