| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6267 |
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| Symbol | |
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| ID | 7975483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1005959 |
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| End bp | 1006849 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644796837 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002948096 |
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| Protein GI | 239820911 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGG CTTCCACCAC CCTGAAACCA CCCGCCGCGG TGGATCATCG CGAACCGCTG
ACGGCCGCGC TTTCGCGCAT GCTGCGCAAC GGCGGGCTCA TGGCCGCCGT GGTGCTGTAC
ACGCTCTACT CCGCGCTGCC TTTTCTGTGG ATCGGGACGA TGTCGGTGCG CACGACCTCC
GAGATCAGCG CCAACCACTT CGCATGGCCC GAAACCTTTC ATTGGGAGAA GTTCCGCATC
GCATGGGTGG ATTCGAACTT TGCGCAGTAC TTCTGGAACA GCTCGCTCAT CGTCGTTTCC
GCGGTAGCCA TCGTCACGCT GCTGGGCGCG GCGGCGGCGC ATTGCCTGGC GCGCTACAAC
TTCCGCGGCA ACCGGCTGGT CTACTTCATC CTGTTCAGCT CGATCGTCTT CCCGCCGCAG
ATCATCCTGA TCTCGCTGTT CCAGGTGCTG GTGGAGTACG AGCTCTACAA CTCGCGGCTC
GGCCTGATGA TCGTGTACGT GAGCCTGCAG TTGCCGTTGA CGGTGTACCT GCTCGAAGGC
TTCTTCGCCC GCATTCCGCA GGACCTCTTC GACGCCGCCA AGATGGACGG GTATTCCGAC
TTCGAGATCT TCTGGCGCAT CGTGCTGCCG GTGGGAATGC CGGCCATCGC GACCACCATC
ATCCTGAACT TCATCCAGCT CTGGAACGAG TTCCTGTTCG CGGTGGTGCT GCTGAGCGAC
CAAGGCTCGC GCACGCTCCC CATCGGCATC CGTGCGTACA TGGGGGACTA CTTCCAGGAC
ATCGGGATGA TCGCCACCGG CATGATGATC GCGGTCATTC CGGTGGTGGT GCTGTACGCC
TTCTTCTCCG AGAAGCTCAT TCAGGGCATG ACGGCCGGCG CCGTCAAGTG A
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| Protein sequence | MTSASTTLKP PAAVDHREPL TAALSRMLRN GGLMAAVVLY TLYSALPFLW IGTMSVRTTS
EISANHFAWP ETFHWEKFRI AWVDSNFAQY FWNSSLIVVS AVAIVTLLGA AAAHCLARYN
FRGNRLVYFI LFSSIVFPPQ IILISLFQVL VEYELYNSRL GLMIVYVSLQ LPLTVYLLEG
FFARIPQDLF DAAKMDGYSD FEIFWRIVLP VGMPAIATTI ILNFIQLWNE FLFAVVLLSD
QGSRTLPIGI RAYMGDYFQD IGMIATGMMI AVIPVVVLYA FFSEKLIQGM TAGAVK
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