More than 300 homologs were found in PanDaTox collection
for query gene Suden_1488 on replicon NC_007575
Organism: Sulfurimonas denitrificans DSM 1251



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007575  Suden_1488  response regulator receiver domain-containing protein  100 
 
 
299 aa  600  1e-170  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.47127  n/a   
 
 
-
 
NC_013512  Sdel_1708  response regulator receiver  55.93 
 
 
295 aa  338  8e-92  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0201  cation-efflux system membrane protein  46.62 
 
 
296 aa  279  4e-74  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1466  putative integral membrane protein  48.66 
 
 
296 aa  268  1e-70  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1962  DNA-binding response regulator, putative  49.49 
 
 
295 aa  243  3.9999999999999997e-63  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1595  DNA-binding response regulator, putative  49.16 
 
 
295 aa  241  9e-63  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1780  DNA-binding response regulator, putative  48.15 
 
 
295 aa  236  3e-61  Campylobacter jejuni RM1221  Bacteria  normal  0.756985  n/a   
 
 
-
 
NC_008599  CFF8240_0408  response regulator receiver domain-containing protein  45.95 
 
 
296 aa  235  8e-61  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0244  conserved hypothetical protein, putative two-component response regulator  44.26 
 
 
291 aa  224  1e-57  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0029  DNA-binding response regulator CzrR  34.48 
 
 
224 aa  66.2  0.0000000006  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00000398254 
 
 
-
 
NC_010322  PputGB1_0043  two component heavy metal response transcriptional regulator  34.48 
 
 
224 aa  66.2  0.0000000006  Pseudomonas putida GB-1  Bacteria  normal  0.216902  normal 
 
 
-
 
NC_009512  Pput_0043  two component heavy metal response transcriptional regulator  34.48 
 
 
224 aa  66.2  0.0000000006  Pseudomonas putida F1  Bacteria  normal  0.955175  hitchhiker  0.00039578 
 
 
-
 
NC_010501  PputW619_0046  two component heavy metal response transcriptional regulator  34.48 
 
 
224 aa  66.2  0.0000000006  Pseudomonas putida W619  Bacteria  normal  0.398344  normal  0.151204 
 
 
-
 
NC_011369  Rleg2_0704  two component transcriptional regulator, winged helix family  30.09 
 
 
227 aa  64.3  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.205827  normal  0.593451 
 
 
-
 
NC_011891  A2cp1_3997  two component transcriptional regulator, winged helix family  31.78 
 
 
227 aa  63.9  0.000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3856  two component transcriptional regulator  31.78 
 
 
227 aa  63.9  0.000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.199978  n/a   
 
 
-
 
NC_012850  Rleg_0767  two component transcriptional regulator, winged helix family  28.32 
 
 
229 aa  63.5  0.000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.870104  normal 
 
 
-
 
NC_011145  AnaeK_3919  two component transcriptional regulator, winged helix family  31.78 
 
 
227 aa  63.5  0.000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1679  transcriptional regulatory protein PhoP, putative  32.46 
 
 
225 aa  62.8  0.000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3709  response regulator receiver:transcriptional regulatory protein, C-terminal  32.46 
 
 
225 aa  62.8  0.000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00140607 
 
 
-
 
NC_007354  Ecaj_0817  response regulator receiver: C terminal  35.9 
 
 
266 aa  61.2  0.00000002  Ehrlichia canis str. Jake  Bacteria  normal  0.0415499  n/a   
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  29.73 
 
 
228 aa  61.6  0.00000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_1012  DNA-binding response regulator  35.9 
 
 
265 aa  61.2  0.00000002  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.0213425  n/a   
 
 
-
 
NC_007492  Pfl01_4240  two component transcriptional regulator  31.58 
 
 
225 aa  60.1  0.00000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.735778  normal 
 
 
-
 
NC_007494  RSP_3088  two component transcriptional regulator  31.3 
 
 
219 aa  60.1  0.00000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4798  two component transcriptional regulator  31.86 
 
 
230 aa  60.1  0.00000004  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.358461 
 
 
-
 
NC_009439  Pmen_2976  two component transcriptional regulator  33.33 
 
 
225 aa  60.1  0.00000005  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.176642 
 
 
-
 
NC_013730  Slin_3454  two component transcriptional regulator, winged helix family  34.48 
 
 
223 aa  59.7  0.00000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3815  two component transcriptional regulator  30.43 
 
 
219 aa  59.7  0.00000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.681737  normal  0.25062 
 
 
-
 
NC_012560  Avin_42680  sigma54-dependent response regulator, CbrB  38.57 
 
 
466 aa  59.7  0.00000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1732  DNA-binding response regulator  34.55 
 
 
229 aa  59.7  0.00000006  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.019008  n/a   
 
 
-
 
NC_007492  Pfl01_4808  two-component response regulator CbrB  37.84 
 
 
478 aa  59.3  0.00000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.069592  hitchhiker  0.0095877 
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  27.68 
 
 
228 aa  59.3  0.00000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_013171  Apre_0086  two component transcriptional regulator, winged helix family  29.38 
 
 
223 aa  59.3  0.00000008  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.00000430601  n/a   
 
 
-
 
NC_010465  YPK_3741  DNA-binding transcriptional regulator BasR  27.43 
 
 
220 aa  58.9  0.0000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3980  DNA-binding transcriptional regulator BasR  27.43 
 
 
220 aa  58.9  0.0000001  Yersinia pestis Angola  Bacteria  hitchhiker  0.00000564215  normal 
 
 
-
 
NC_009708  YpsIP31758_3607  DNA-binding transcriptional regulator BasR  27.43 
 
 
220 aa  58.9  0.0000001  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000202279  n/a   
 
 
-
 
NC_004578  PSPTO_0964  sigma-54 dependent transcriptional regulator/response regulator  36 
 
 
478 aa  58.2  0.0000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0831  response regulator receiver:sigma-54 factor, interaction region  36 
 
 
494 aa  58.2  0.0000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00148287 
 
 
-
 
NC_007643  Rru_A2913  two component transcriptional regulator  28.32 
 
 
227 aa  58.2  0.0000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0379396  n/a   
 
 
-
 
NC_007947  Mfla_1307  two component transcriptional regulator  27.63 
 
 
223 aa  57.8  0.0000002  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.0973239 
 
 
-
 
NC_010515  Bcenmc03_3931  two component transcriptional regulator  28.68 
 
 
221 aa  57.8  0.0000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_1082  response regulator receiver protein  32.2 
 
 
194 aa  57.8  0.0000002  Aciduliprofundum boonei T469  Archaea  normal  0.167563  n/a   
 
 
-
 
NC_009439  Pmen_3589  two-component response regulator CbrB  40.32 
 
 
477 aa  57.4  0.0000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1749  two component heavy metal response transcriptional regulator  30.97 
 
 
242 aa  57.4  0.0000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_011667  Tmz1t_2388  heavy metal response regulator  32.46 
 
 
228 aa  57.4  0.0000003  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000142984  normal  0.119734 
 
 
-
 
NC_007575  Suden_1458  two component transcriptional regulator  33.63 
 
 
218 aa  57  0.0000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_49180  two-component response regulator PhoP  30.7 
 
 
225 aa  57  0.0000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000831037 
 
 
-
 
NC_009092  Shew_2348  two component transcriptional regulator  28.95 
 
 
224 aa  57.4  0.0000003  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000162881  normal 
 
 
-
 
NC_008543  Bcen2424_3589  two component transcriptional regulator  28.68 
 
 
221 aa  57.4  0.0000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.106176  normal 
 
 
-
 
NC_008554  Sfum_0821  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  27.13 
 
 
1139 aa  57.4  0.0000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.187038 
 
 
-
 
NC_011662  Tmz1t_2101  two component heavy metal response transcriptional regulator, winged helix family  32.46 
 
 
228 aa  57.4  0.0000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1216  two component transcriptional regulator  30.7 
 
 
225 aa  57  0.0000004  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1186  winged helix family two component transcriptional regulator  30.7 
 
 
225 aa  57  0.0000004  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4696  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.33 
 
 
480 aa  57  0.0000004  Pseudomonas putida KT2440  Bacteria  normal  0.511164  decreased coverage  0.00000622606 
 
 
-
 
NC_002978  WD0732  cell cycle transcriptional regulator  32.76 
 
 
256 aa  57  0.0000004  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4561  two component, sigma54 specific, Fis family transcriptional regulator  37.33 
 
 
480 aa  57  0.0000004  Pseudomonas putida F1  Bacteria  normal  0.601271  hitchhiker  0.000975449 
 
 
-
 
NC_007947  Mfla_1254  two component, sigma54 specific, Fis family transcriptional regulator  30.33 
 
 
472 aa  57  0.0000004  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.388952 
 
 
-
 
NC_010552  BamMC406_3495  two component transcriptional regulator  28.68 
 
 
221 aa  56.6  0.0000004  Burkholderia ambifaria MC40-6  Bacteria  normal  0.972301  normal  0.0200045 
 
 
-
 
NC_010501  PputW619_1198  two component transcriptional regulator  29.82 
 
 
225 aa  56.6  0.0000005  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2540  response regulator receiver  30.97 
 
 
231 aa  56.6  0.0000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.255276  normal 
 
 
-
 
NC_003910  CPS_2524  DNA-binding response regulator  31.25 
 
 
240 aa  56.6  0.0000005  Colwellia psychrerythraea 34H  Bacteria  normal  0.185339  n/a   
 
 
-
 
NC_007511  Bcep18194_B2526  two component transcriptional regulator  28.68 
 
 
221 aa  56.6  0.0000005  Burkholderia sp. 383  Bacteria  normal  normal  0.748885 
 
 
-
 
NC_014148  Plim_1915  sigma-54 factor interaction domain-containing protein  32.08 
 
 
467 aa  56.6  0.0000005  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0712701  n/a   
 
 
-
 
NC_010086  Bmul_5097  two component transcriptional regulator  27.91 
 
 
221 aa  56.6  0.0000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.361428  normal  0.112132 
 
 
-
 
NC_008391  Bamb_5325  two component transcriptional regulator  28.68 
 
 
221 aa  56.6  0.0000005  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_1701  DNA-binding response regulator  32.74 
 
 
230 aa  56.6  0.0000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.00672994  n/a   
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  25.58 
 
 
446 aa  56.2  0.0000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
CP001637  EcDH1_1682  two component heavy metal response transcriptional regulator, winged helix family  27.93 
 
 
260 aa  56.2  0.0000006  Escherichia coli DH1  Bacteria  decreased coverage  0.000000000000361446  n/a   
 
 
-
 
NC_010498  EcSMS35_1216  transcriptional regulatory protein YedW  27.93 
 
 
260 aa  56.2  0.0000006  Escherichia coli SMS-3-5  Bacteria  decreased coverage  0.000000203871  normal  0.637592 
 
 
-
 
NC_010322  PputGB1_4695  two component, sigma54 specific, Fis family transcriptional regulator  35.92 
 
 
480 aa  56.2  0.0000006  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000157524 
 
 
-
 
NC_009801  EcE24377A_2200  transcriptional regulatory protein YedW  27.93 
 
 
260 aa  56.2  0.0000006  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000454941  n/a   
 
 
-
 
NC_009801  EcE24377A_3490  DNA-binding transcriptional regulator QseB  26.52 
 
 
215 aa  56.2  0.0000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2070  transcriptional regulatory protein YedW  27.93 
 
 
260 aa  56.2  0.0000006  Escherichia coli HS  Bacteria  hitchhiker  3.15395e-18  n/a   
 
 
-
 
NC_009438  Sputcn32_2255  two component transcriptional regulator  26.55 
 
 
224 aa  56.2  0.0000006  Shewanella putrefaciens CN-32  Bacteria  normal  0.39138  n/a   
 
 
-
 
NC_010468  EcolC_1676  transcriptional regulatory protein YedW  27.93 
 
 
260 aa  56.2  0.0000006  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000000350308  normal  0.20506 
 
 
-
 
NC_007347  Reut_A3437  two component transcriptional regulator  30.36 
 
 
225 aa  55.8  0.0000007  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  30.17 
 
 
448 aa  56.2  0.0000007  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0914  transcriptional regulatory protein YedW  27.93 
 
 
260 aa  56.2  0.0000007  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000013212  n/a   
 
 
-
 
NC_009656  PSPA7_4200  two-component response regulator PhoP  29.82 
 
 
225 aa  56.2  0.0000007  Pseudomonas aeruginosa PA7  Bacteria  normal  0.238609  n/a   
 
 
-
 
NC_009901  Spea_4093  two component, sigma54 specific, Fis family transcriptional regulator  26.09 
 
 
457 aa  56.2  0.0000007  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01884  predicted DNA-binding response regulator in two-component system with YedV  27.93 
 
 
223 aa  55.8  0.0000008  Escherichia coli BL21(DE3)  Bacteria  unclonable  0.000000533293  n/a   
 
 
-
 
NC_010322  PputGB1_4230  two component transcriptional regulator  30.7 
 
 
241 aa  55.8  0.0000008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_2748  transcriptional regulatory protein YedW  27.93 
 
 
233 aa  55.8  0.0000008  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00000892088  normal  0.227347 
 
 
-
 
NC_005945  BAS4954  DNA-binding response regulator  32.73 
 
 
225 aa  55.8  0.0000008  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.00000000043771  n/a   
 
 
-
 
NC_007530  GBAA_5331  DNA-binding response regulator  32.73 
 
 
225 aa  55.8  0.0000008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.00000000933212  n/a   
 
 
-
 
NC_008740  Maqu_0670  two component, sigma54 specific, Fis family transcriptional regulator  51.06 
 
 
464 aa  55.8  0.0000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01874  hypothetical protein  27.93 
 
 
223 aa  55.8  0.0000008  Escherichia coli BL21  Bacteria  unclonable  0.00000061937  n/a   
 
 
-
 
NC_013132  Cpin_3739  two component transcriptional regulator, winged helix family  31.53 
 
 
266 aa  55.8  0.0000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.453489  normal  0.0202921 
 
 
-
 
NC_009654  Mmwyl1_4013  two component, sigma54 specific, Fis family transcriptional regulator  32.43 
 
 
467 aa  55.8  0.0000009  Marinomonas sp. MWYL1  Bacteria  normal  0.0316661  normal  0.37664 
 
 
-
 
NC_013522  Taci_0717  two component transcriptional regulator, winged helix family  26.97 
 
 
226 aa  55.8  0.0000009  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000154116  n/a   
 
 
-
 
NC_009783  VIBHAR_02265  hypothetical protein  26.81 
 
 
483 aa  55.8  0.0000009  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_3062  two-component response regulator CbrB  48.94 
 
 
463 aa  55.8  0.0000009  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1620  two component transcriptional regulator  29.51 
 
 
228 aa  55.8  0.0000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4796  response regulator  31.82 
 
 
225 aa  55.1  0.000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.000000000000140673  n/a   
 
 
-
 
NC_007760  Adeh_1829  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  24.5 
 
 
357 aa  55.1  0.000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3375  two-component response regulator CbrB  46.15 
 
 
472 aa  55.5  0.000001  Saccharophagus degradans 2-40  Bacteria  normal  0.0307811  normal  0.146362 
 
 
-
 
NC_011830  Dhaf_2918  two component transcriptional regulator, winged helix family  32.52 
 
 
232 aa  55.1  0.000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1746  two component transcriptional regulator  25.66 
 
 
224 aa  55.5  0.000001  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.000000000480188  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  28.06 
 
 
476 aa  55.1  0.000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
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