Gene Pmen_2976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2976 
Symbol 
ID5107694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3301660 
End bp3302337 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content61% 
IMG OID640504234 
Producttwo component transcriptional regulator 
Protein accessionYP_001188463 
Protein GI146307998 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.176642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTGT TGGTGGTGGA GGATGAGGCG CTGCTGCGTC ACCATCTGTT CACTCGCCTC 
AGTGAAAACG GGCATGTGGT GGATGCCGTG CGCACCGCTG AAGAGGCGCT GTATCGAGCT
GAGTCCTTCA ATCACGACCT GGCTCTGGTC GACCTGGGTC TGCCGGGCAT GAGCGGCATC
GACCTGATCC GCCAGCTGCG CAGCCAGGAC AAGAACTTTC CGATCCTCAT CCTCACCGCC
CGCGGCAATT GGCAGGACAA GGTCGAGGGC CTGTCCTGCG GTGCCGACGA CTATCTGGTG
AAACCCTTTC AGTTCGAGGA ACTGGAGGCA CGCCTGAACG CCTTGCTGCG CCGTTCCTCG
GGCTTTACCA AATCCACCAT CGAGGCCGGC TCCCTGGTGC TCGATCTCAA TCGCAAGCAG
GCGACCGTCG ACGAGCAGTC GCTGCAGCTC ACTGCCTACG AGTACCGCAT CCTCGAGTAC
CTCATGCTCC ATCACCAGCA GGTGGTGCCG AAGGAACGCC TGATGGAGCA GCTGTACCCC
GGCGATGACG AACGTGATCC CAACGTCATC GAAGTGCTGG TCGGGCGTCT GCGTCGCAAG
CTGGAGGCGA TGCTGGGCGG CAAGCTGATC GAAACCGTGC GTGGCCAGGG CTACATGTTC
AACGAGCGCT GCAAGTGA
 
Protein sequence
MKLLVVEDEA LLRHHLFTRL SENGHVVDAV RTAEEALYRA ESFNHDLALV DLGLPGMSGI 
DLIRQLRSQD KNFPILILTA RGNWQDKVEG LSCGADDYLV KPFQFEELEA RLNALLRRSS
GFTKSTIEAG SLVLDLNRKQ ATVDEQSLQL TAYEYRILEY LMLHHQQVVP KERLMEQLYP
GDDERDPNVI EVLVGRLRRK LEAMLGGKLI ETVRGQGYMF NERCK