Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2348 |
Symbol | |
ID | 4922075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2742497 |
End bp | 2743171 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163933 |
Product | two component transcriptional regulator |
Protein accession | YP_001094473 |
Protein GI | 127513276 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000162881 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATTT TGGTCGTTGA AGATGATCCC CTACTGTCCC ACCACCTCAA GGTACAACTG AGCGAGTTAG GCAACCAGGT TCAAGTCGCC CAGACCGCCA AAGAAGGCTT CTATCAAGCG ACTAACTATC CCATAGACAT TGCCATCATA GACCTTGGCC TGCCGGATCA AGACGGTATC TCGCTGATCC AGTCGCTGCG CAAGGCCGAA CTCAAGGCGC CTATTCTCAT CCTCACCGCC CGGGTTAACT GGCAGGATAA GGTCGAGGGG CTCAACGCCG GCGCCGACGA CTATCTGGTG AAGCCCTTCC AAAAAGAGGA GCTGGTCGCC AGACTCGACG CCCTGGTGCG TCGCAGTGCG GGCTTCGTCA AACCGCAGAT CACCAGCGGA CCGTTGGAAC TGGACTTGGC CGCCAAACAG GTCACGCTGG ATCAGAGCCC CATGGAGGTG ACCGCGTTCG AATATCAGAT CCTTGAATAC CTGATGCGCC ACTGTCACGA GGTGGTGGCC AAACAGCGAC TACTGGATGT GATCTATGGC GATAAGGAAG GCGATCCCAA CACCATTGAA GTAATGGTCA GCCGTCTGCG CAAGAAACTG ACCAAGGGCG GACTAGAAAA CCCCATTGCC ACCATTCGTG GTCAGGGCTA CAAGTTTAAT CTGCCATGCA AATAA
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Protein sequence | MRILVVEDDP LLSHHLKVQL SELGNQVQVA QTAKEGFYQA TNYPIDIAII DLGLPDQDGI SLIQSLRKAE LKAPILILTA RVNWQDKVEG LNAGADDYLV KPFQKEELVA RLDALVRRSA GFVKPQITSG PLELDLAAKQ VTLDQSPMEV TAFEYQILEY LMRHCHEVVA KQRLLDVIYG DKEGDPNTIE VMVSRLRKKL TKGGLENPIA TIRGQGYKFN LPCK
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