More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_0043 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_0043  two component heavy metal response transcriptional regulator  100 
 
 
224 aa  449  1e-125  Pseudomonas putida GB-1  Bacteria  normal  0.216902  normal 
 
 
-
 
NC_002947  PP_0029  DNA-binding response regulator CzrR  100 
 
 
224 aa  449  1e-125  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00000398254 
 
 
-
 
NC_009512  Pput_0043  two component heavy metal response transcriptional regulator  100 
 
 
224 aa  449  1e-125  Pseudomonas putida F1  Bacteria  normal  0.955175  hitchhiker  0.00039578 
 
 
-
 
NC_010501  PputW619_0046  two component heavy metal response transcriptional regulator  100 
 
 
224 aa  449  1e-125  Pseudomonas putida W619  Bacteria  normal  0.398344  normal  0.151204 
 
 
-
 
NC_009439  Pmen_1174  two component heavy metal response transcriptional regulator  71.75 
 
 
224 aa  339  2e-92  Pseudomonas mendocina ymp  Bacteria  normal  0.216853  normal 
 
 
-
 
NC_007492  Pfl01_3624  two component heavy metal response transcriptional regulator  70.4 
 
 
224 aa  333  2e-90  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1438  DNA-binding response regulator CzrR  69.51 
 
 
224 aa  331  7.000000000000001e-90  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4283  two component heavy metal response transcriptional regulator  69.51 
 
 
224 aa  331  7.000000000000001e-90  Pseudomonas putida F1  Bacteria  normal  0.0230752  normal 
 
 
-
 
NC_010322  PputGB1_4369  two component heavy metal response transcriptional regulator  69.06 
 
 
224 aa  329  2e-89  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0732935 
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_002947  PP_0047  DNA-binding heavy metal response regulator, putative  66.96 
 
 
224 aa  317  1e-85  Pseudomonas putida KT2440  Bacteria  normal  0.116112  hitchhiker  0.00000494979 
 
 
-
 
NC_009512  Pput_0061  two component heavy metal response transcriptional regulator  66.96 
 
 
224 aa  317  1e-85  Pseudomonas putida F1  Bacteria  normal  0.382659  hitchhiker  0.0034413 
 
 
-
 
NC_010322  PputGB1_0061  two component heavy metal response transcriptional regulator  66.96 
 
 
224 aa  317  1e-85  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0868462 
 
 
-
 
NC_010501  PputW619_0064  two component heavy metal response transcriptional regulator  66.96 
 
 
224 aa  317  1e-85  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000118539 
 
 
-
 
NC_009656  PSPA7_2714  putative two-component response regulator  65.02 
 
 
224 aa  309  2e-83  Pseudomonas aeruginosa PA7  Bacteria  normal  0.681326  n/a   
 
 
-
 
NC_008463  PA14_31960  putative two-component response regulator  65.02 
 
 
224 aa  309  2e-83  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.029957  normal 
 
 
-
 
NC_008758  Pnap_4558  two component heavy metal response transcriptional regulator  60.27 
 
 
226 aa  290  1e-77  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  59.73 
 
 
225 aa  268  4e-71  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  60.36 
 
 
225 aa  267  1e-70  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  60.36 
 
 
226 aa  267  1e-70  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  59.91 
 
 
228 aa  267  1e-70  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  59.73 
 
 
225 aa  267  1e-70  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  59.91 
 
 
228 aa  266  2.9999999999999995e-70  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  59.91 
 
 
228 aa  266  2.9999999999999995e-70  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  60.54 
 
 
228 aa  265  4e-70  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  55.26 
 
 
232 aa  265  4e-70  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  59.28 
 
 
225 aa  265  4e-70  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_007298  Daro_2474  heavy metal response regulator  58.48 
 
 
223 aa  265  5.999999999999999e-70  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  61.26 
 
 
228 aa  265  5.999999999999999e-70  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  59.28 
 
 
225 aa  264  7e-70  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  60.81 
 
 
228 aa  264  7e-70  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  59.46 
 
 
226 aa  264  7e-70  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3892  putative two-component response regulator  54.46 
 
 
229 aa  264  8.999999999999999e-70  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3559  two component heavy metal response transcriptional regulator, winged helix family  57.59 
 
 
225 aa  264  8.999999999999999e-70  Variovorax paradoxus S110  Bacteria  normal  0.710681  n/a   
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  56.19 
 
 
228 aa  263  2e-69  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_007492  Pfl01_0202  two component heavy metal response transcriptional regulator  57.92 
 
 
226 aa  262  3e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_45880  putative two-component response regulator  54.91 
 
 
229 aa  262  3e-69  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.954426 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  58.48 
 
 
223 aa  262  4e-69  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  58.11 
 
 
225 aa  261  6.999999999999999e-69  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_010002  Daci_0451  two component heavy metal response transcriptional regulator  58.11 
 
 
230 aa  260  1e-68  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0422  two component heavy metal response transcriptional regulator  58.67 
 
 
227 aa  260  1e-68  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  56.7 
 
 
224 aa  259  2e-68  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_010676  Bphyt_4933  two component heavy metal response transcriptional regulator, winged helix family  57.73 
 
 
223 aa  259  3e-68  Burkholderia phytofirmans PsJN  Bacteria  normal  0.461594  normal  0.344735 
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  57.14 
 
 
228 aa  258  4e-68  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_003296  RSp0489  response regulator for cobalt zinc cadmium resistance transcription regulator protein  56.7 
 
 
224 aa  258  5.0000000000000005e-68  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1748a  hypothetical protein  57.73 
 
 
223 aa  258  5.0000000000000005e-68  Burkholderia xenovorans LB400  Bacteria  normal  0.0697031  normal  0.305387 
 
 
-
 
NC_010084  Bmul_2337  two component heavy metal response transcriptional regulator  57.66 
 
 
227 aa  258  5.0000000000000005e-68  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3374  heavy metal response regulator  58.04 
 
 
229 aa  258  7e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1236  two component heavy metal response transcriptional regulator  58.9 
 
 
219 aa  257  1e-67  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  56.95 
 
 
224 aa  257  1e-67  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_010681  Bphyt_1510  two component heavy metal response transcriptional regulator, winged helix family  57.14 
 
 
227 aa  257  1e-67  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5383  two component heavy metal response transcriptional regulator  56.31 
 
 
225 aa  256  2e-67  Pseudomonas putida KT2440  Bacteria  normal  normal  0.651671 
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  62.16 
 
 
226 aa  256  2e-67  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1381  two component heavy metal response transcriptional regulator  55.8 
 
 
224 aa  256  2e-67  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.961918 
 
 
-
 
NC_007963  Csal_0102  two component heavy metal response transcriptional regulator  56.25 
 
 
223 aa  256  2e-67  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.753235  n/a   
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  56.31 
 
 
225 aa  255  3e-67  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0019  two component heavy metal response transcriptional regulator  56.31 
 
 
225 aa  255  3e-67  Pseudomonas putida GB-1  Bacteria  normal  0.593373  normal 
 
 
-
 
NC_009512  Pput_0017  two component heavy metal response transcriptional regulator  56.31 
 
 
225 aa  255  3e-67  Pseudomonas putida F1  Bacteria  normal  normal  0.0468746 
 
 
-
 
NC_004578  PSPTO_3603  DNA-binding heavy metal response regulator  57.59 
 
 
229 aa  255  4e-67  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.203952  n/a   
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  57.92 
 
 
225 aa  255  4e-67  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  56.44 
 
 
226 aa  255  4e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  57.85 
 
 
225 aa  255  4e-67  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  57.85 
 
 
225 aa  255  4e-67  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  57.85 
 
 
225 aa  255  4e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_007348  Reut_B3961  heavy metal response regulator  55.86 
 
 
229 aa  254  5e-67  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00889091  n/a   
 
 
-
 
NC_007912  Sde_1948  response regulator receiver domain-containing protein  57.99 
 
 
226 aa  255  5e-67  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.679676 
 
 
-
 
NC_010515  Bcenmc03_3842  two component heavy metal response transcriptional regulator  57.14 
 
 
227 aa  254  6e-67  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.67414 
 
 
-
 
NC_008061  Bcen_4683  two component heavy metal response transcriptional regulator  57.14 
 
 
228 aa  254  7e-67  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.222547  n/a   
 
 
-
 
NC_008543  Bcen2424_3680  two component heavy metal response transcriptional regulator  57.14 
 
 
228 aa  254  7e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224842  normal 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  57.4 
 
 
225 aa  254  9e-67  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2165  two component heavy metal response transcriptional regulator, winged helix family  58.56 
 
 
232 aa  254  1.0000000000000001e-66  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.77286 
 
 
-
 
NC_008784  BMASAVP1_0010  transcriptional activator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia mallei SAVP1  Bacteria  normal  0.121051  n/a   
 
 
-
 
NC_009075  BURPS668_A1524  transcriptional activator protein IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1028  DNA-binding response regulator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0282692  n/a   
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  56.95 
 
 
225 aa  253  1.0000000000000001e-66  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_009078  BURPS1106A_A1439  transcriptional activator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0030  DNA-binding response regulator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia pseudomallei 1710b  Bacteria  normal  0.122488  n/a   
 
 
-
 
NC_010070  Bmul_6173  two component heavy metal response transcriptional regulator  57.14 
 
 
228 aa  253  1.0000000000000001e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.400074 
 
 
-
 
NC_008835  BMA10229_0402  transcriptional activator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0800763  n/a   
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  55.36 
 
 
226 aa  253  1.0000000000000001e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A1180  transcriptional activator IrlR  57.14 
 
 
229 aa  254  1.0000000000000001e-66  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0831411  n/a   
 
 
-
 
NC_007404  Tbd_1749  two component heavy metal response transcriptional regulator  59.11 
 
 
242 aa  253  2.0000000000000002e-66  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2430  two component heavy metal response transcriptional regulator  56.7 
 
 
227 aa  253  2.0000000000000002e-66  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1376  DNA-binding response regulator IrlR  57.59 
 
 
229 aa  253  2.0000000000000002e-66  Burkholderia thailandensis E264  Bacteria  normal  0.498923  n/a   
 
 
-
 
NC_007951  Bxe_A2960  two component heavy metal response transcriptional regulator  56.5 
 
 
227 aa  253  2.0000000000000002e-66  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0344  two component heavy metal response transcriptional regulator  54.02 
 
 
231 aa  251  5.000000000000001e-66  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1497  heavy metal response regulator  56.89 
 
 
228 aa  251  7e-66  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001641  putative two component response regulator transcription regulator protein  53.1 
 
 
230 aa  251  7e-66  Vibrio sp. Ex25  Bacteria  normal  0.170142  n/a   
 
 
-
 
NC_007952  Bxe_B0708  two component heavy metal response transcriptional regulator  57.59 
 
 
226 aa  250  1e-65  Burkholderia xenovorans LB400  Bacteria  normal  0.328024  normal  0.9016 
 
 
-
 
NC_009656  PSPA7_5607  two-component response regulator  59.82 
 
 
229 aa  250  1e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_64570  two-component response regulator  59.38 
 
 
229 aa  250  1e-65  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  56.83 
 
 
228 aa  249  2e-65  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3615  two component heavy metal response transcriptional regulator, winged helix family  56 
 
 
224 aa  249  3e-65  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3584  two component heavy metal response transcriptional regulator  55.56 
 
 
226 aa  249  3e-65  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1699  two component heavy metal response transcriptional regulator  55.8 
 
 
226 aa  249  3e-65  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00419772 
 
 
-
 
NC_010468  EcolC_3426  DNA-binding transcriptional activator CusR  54.5 
 
 
226 aa  249  3e-65  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3720  two component heavy metal response transcriptional regulator, winged helix family  56 
 
 
224 aa  248  6e-65  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010676  Bphyt_4389  two component heavy metal response transcriptional regulator, winged helix family  57.59 
 
 
226 aa  248  6e-65  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0651  DNA-binding transcriptional activator CusR  54.5 
 
 
227 aa  248  8e-65  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.589216  normal 
 
 
-
 
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